DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and robo2

DIOPT Version :9

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster


Alignment Length:1007 Identity:229/1007 - (22%)
Similarity:369/1007 - (36%) Gaps:218/1007 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 PYFVKQPNDTTFDVNKNRLINDVTLSCLANGYPTPSYTWY---REVYVDDRLEYQKIDPLAQDRY 423
            |..::.|.|||  |.||   :..|.:|.|.|.|||:..|:   ||:..|          ....|.
  Fly    91 PRIIEHPMDTT--VPKN---DPFTFNCQAEGNPTPTIQWFKDGRELKTD----------TGSHRI 140

  Fly   424 TISGGNL----IIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIM-EFNLK------RSAE 477
            .:..|.|    :|:..::: |.|.|.|.|:|:||..||.:|.|...|:. ||.|:      ...|
  Fly   141 MLPAGGLFFLKVIHSRRES-DAGTYWCEAKNEFGVARSRNATLQVA
FLRDEFRLEPANTRVAQGE 204

  Fly   478 TSEMNWGKSIFCDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVDRANYSCTV 542
            .:.|.      |..|:..|:.:..|.::.....:..::|:.:...|.|........|...|.|.|
  Fly   205 VALME------CGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVV 263

  Fly   543 QTLVSDTGRNGPFFPLRVTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYPIPSYNWTR 607
            :.:|........|..:.|.|        |....|:  .:..|.|..:..:|...|.|:|...|.|
  Fly   264 KNVVGTRESATAFLKV
HVRP--------FLIRGPQ--NQTAVVGSSVVFQCRIGGDPLPDVLWRR 318

  Fly   608 Q----GLPLQRNAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPLK 668
            .    .:||:|  ..:...|.|.:.:.|..|.|||:|...|....:..:..:.:...|:|.|..|
  Fly   319 TASGGNMPLRR--VHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGITATGILTV
HAPPKFVIRPK 381

  Fly   669 DMIKDYNSDVTFICEAFAIPDANYTW------------YKNAERLDPANINRDRYIIQDNVLTIK 721
            :.:.:...:|.|.|:|...|.....|            |::. |::.......|     :||:|.
  Fly   382 NQLVEIGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDG-RMEVTLTPEGR-----SVLSIA 440

  Fly   722 FLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTT--------IV 778
            ...::....:..|.|.|.:.   |.:...|:|:...|:..|...|...|   |.|        :.
  Fly   441 RFAREDSGKVVTCNALNAVG---SVSSRTVVSVDTQFELPPPIIEQGPV---NQTLPVKSIVVLP 499

  Fly   779 CDPEAAPRPKFQWKKDGQVIGSGGH--RRILPSGTLTISPTSR-DDEGIYTCIASNQAGTDESHA 840
            |.....|.|:..|..||..|....|  |.:..:|.||||...| :|||:|||:|||:.| ..|.:
  Fly   500 CRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRHEDEGLYTCVASNRNG-KSSWS 563

  Fly   841 RVIVLQ-----EIRFIETP-----------PQRIVSKEHD--LIFLHCEAAFDELLDIAYVWKHN 887
            ..:.|.     .|:|...|           ||.:...|:.  |.:..........| :.||.:..
  Fly   564 GYLRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSL-VGYVIEMF 627

  Fly   888 GEVLKNNHDGTGRIIVDWNRL--TVHNTSMRDAG-----DYECVVKSAVNEISSKTSVSIEGAPG 945
            |   ||..||       |..:  .|.||:....|     :|..::::     .:...:|:.....
  Fly   628 G---KNETDG-------WVAVGTRVQNTTFTQTGLLPGVNYFFLIRA-----ENSHGLSLPSPMS 677

  Fly   946 APGGVQV------IQISKTKAIIEWVDGSHNGRAIRYYN--ILGRTNWNRTWVNVS------THV 996
            .|..|..      :.:|:.:|.:      .:|..:...|  ::..|:...||..::      .:|
  Fly   678 EPITVGTRYFNSGLDLSEARASL------LSGDVVELSNASVVDSTSMKLTWQIINGKYVEGFYV 736

  Fly   997 QAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIA-------P 1054
            .||::........|.|.:.|.......|.:|      ...::.|.:.||   ||.||       .
  Fly   737 YARQLPNPIVNNPAPVTSNTNPLLGSTSTSA------SASASASALIST---KPNIAAAGKRDGE 792

  Fly  1055 RNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLN 1119
            .|..|||..        .||        ...|::...|.|.              |.:...|...
  Fly   793 TNQSGGGAP--------TPL--------NTKYRMLTILNGG--------------GASSCTITGL 827

  Fly  1120 NYYTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSRENI 1184
            ..||.||..:.......:|..|...:..:.||:|..||....||..||:...:.|:..::  ::.
  Fly   828 VQYTLYEFFIVPFYKSVEGKPSNSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPEL--KDR 890

  Fly  1185 RGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWAL--------IVGLQPDTYYFVKVMAYNAAGEG 1241
            .|.|:.:.:     ..:..|:.:..||...|..:        :..|.....|.|.|.|.|.||.|
  Fly   891 HGVLLNYHV-----IVRGIDTAHNFSRILTNVTIDAASPTLVLANLTEGVMYTVGVAAGNNAGVG 950

  Fly  1242 ----PESERFEERTYRKAP----QKPPSSVHV 1265
                |.:.|.:..|.|..|    :.|.:..||
  Fly   951 PYCVPATLRLDPITKRLDPFINQRYPINQDHV 982

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..460 CDD:299845 33/104 (32%)
I-set 362..462 CDD:254352 34/106 (32%)
Ig 466..559 CDD:299845 19/99 (19%)
IG_like 584..657 CDD:214653 20/76 (26%)
IGc2 586..645 CDD:197706 18/62 (29%)
Ig 667..751 CDD:299845 17/95 (18%)
IG_like 676..751 CDD:214653 16/86 (19%)
IG_like 765..844 CDD:214653 30/89 (34%)
Ig 773..844 CDD:299845 28/81 (35%)
I-set 851..940 CDD:254352 19/108 (18%)
Ig 866..944 CDD:299845 15/84 (18%)
FN3 944..1043 CDD:238020 18/112 (16%)
FN3 1053..1146 CDD:238020 18/99 (18%)
fn3 1156..1244 CDD:278470 23/99 (23%)
fn3 1259..1346 CDD:278470 3/7 (43%)
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 35/109 (32%)
I-set 91..184 CDD:254352 35/108 (32%)
I-set 190..279 CDD:254352 18/94 (19%)
Ig2_Robo 193..279 CDD:143201 16/91 (18%)
I-set 283..370 CDD:254352 23/98 (23%)
Ig 300..370 CDD:299845 18/71 (25%)
Ig 388..>457 CDD:299845 14/74 (19%)
I-set 479..561 CDD:254352 29/85 (34%)
Ig 496..561 CDD:143165 25/65 (38%)
FN3 588..681 CDD:238020 20/108 (19%)
FN3 <817..856 CDD:238020 8/52 (15%)
fn3 864..952 CDD:278470 22/94 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452261
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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