DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and dscamb

DIOPT Version :9

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:1402 Identity:311/1402 - (22%)
Similarity:520/1402 - (37%) Gaps:323/1402 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 YRDAYTDEDNFCPEHWVSFRQTCYRFIRSPKRNWAEAKKICKAHNADLINVDNVEKHSFILKNLI 192
            :|:.||            .|....|.:|.   |.|..|.|..|...:.::|.:.||.:..|.:  
Zfish   122 FREPYT------------VRVADQRVMRG---NTAVFKCIIPASVEEYVSVVSWEKDTVSLVS-- 169

  Fly   193 LQNQRQNRFFISARQTGPLNWVNDDNTQLVQIEDSFSMDEQVPLENEDLHDNRFLVQNDLNNQNI 257
                 .:|:.|::  ||.| ::.|     ||.||:                        :|....
Zfish   170 -----GSRYLITS--TGAL-YILD-----VQSEDA------------------------VNIYRC 197

  Fly   258 NNPNQFYNSLPGTVNQRNQNNLRGFIGPNQPYGDNRYVRDRVVYAFSKKRDRWMFMPAYEIELNL 322
            ...:::      |...|..|:.|..:  ::|......:.|    .|.:|.    .|..:.:||. 
Zfish   198 TTRHRY------TGETRQSNSARLLL--SEPVDSAPVILD----GFERKE----VMVGHRVELP- 245

  Fly   323 FICES------KVLYSSDNVNIKLDDKRPYHY---GLDINDMERIPRGPY--------------- 363
              |::      :..:..||..::.|.:  ||.   ||.|........|.|               
Zfish   246 --CKASGHPPPRYRWLRDNSPLESDSR--YHQSVSGLLIEATRPSDAGSYVCEVWNSFGNAKVVG 306

  Fly   364 --FVKQPNDTTFDVNKNR--LINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLAQDRYT 424
              .||||........|.|  :.:.|:|.|...|......||||..   ::: ||.|:.    |.|
Zfish   307 RLVVKQPLKAVVSPRKVRGSVGSQVSLFCSVTGSDEFDITWYRNA---EKI-YQGINV----RIT 363

  Fly   425 -ISGGNLIIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKR-----SAETSEMNW 483
             |:..||:: |.....|.|||.|.|.|  |::.::..   ...::|....:     |.:....|.
Zfish   364 GINNENLVM-EGMAKSDGGAYQCFARN--GKMSTQDL---VQVVLEDGTPKILSAFSEKVVSPNE 422

  Fly   484 GKSIFCDPPQH-----YPDVRYYWARDYFPNFVEEDQRV--FVSRDG----ALYFSFIETVDRAN 537
            ..|:.|    |     .|.|.  |..|..|...:.:.|:  .::.:|    .|..|..:..|...
Zfish   423 PISLVC----HVKGTPLPTVT--WTLDDDPVIKDSNHRMDRIITTEGHVLSYLNVSHTQVSDGGV 481

  Fly   538 YSCTVQT---LVSDTGRNGPFFPLRVTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYP 599
            |.||...   .||...|.....|..:.|..|..|               :||.:..:.|...|||
Zfish   482 YRCTCNNSAGSVSYQARINVRGPASIRPMKNVTA---------------IAGRDTYIHCRIIGYP 531

  Fly   600 IPSYNWTRQG--LPLQRNAYTINYGRVLIIQNATTNDNGEYSC-TITNPRKTLMKSIYINIQMRP 661
            ..|..|.:..  ||.............|.:.|...:|.|||:| .:.:|.|.:.:|:::.:::.|
Zfish   532 YYSIKWYKDSNLLPFNHRQRAFENNGTLKLSNVQNSDEGEYTCYVLVDPEKQIHRSVHVTVKVPP 596

  Fly   662 QFTIPLKDMIKDYNSDVTFICEAFAIP--------DANYTWYKNAERLDPANINRDRYIIQDNV- 717
                    :|:..:|....|.:...||        ..:.||:|     |...||....:..||: 
Zfish   597 --------LIQHSDSQSASIGQRVFIPCVVISGDLPMSITWHK-----DGRPINASLGVTIDNID 648

  Fly   718 ----LTIKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTTIV 778
                |.|..| .:..:..|.|.|:|:......|.|| ::.:.|.|:..|.:.:  .:|..:.|:.
Zfish   649 FTSSLRISNL-SEIHNGSYTCIARNEAAAVEHSIQL-IVKVPPHFEVQPKDQD--GIYGKSVTLN 709

  Fly   779 CDPEAAPRPKFQW--KKDGQV-------IGSGGHRRILPSGTLTISPTSRDDEGIYTCIASNQAG 834
            |..:..|.|...|  .|...|       :.||...::|.:|:|.|.....:|.|.|.|..||..|
Zfish   710 CSAKGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLENGSLLIKHVLEEDAGFYLCKVSNDVG 774

  Fly   835 TDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTG 899
            .|.|.:..:.::....|.:.|....:::..:..:.|.|..::.:.:.  |:....::  |.| ..
Zfish   775 ADISKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVR--WEKESHII--NPD-MS 834

  Fly   900 RIIVD--------WNRLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQIS 956
            |.:|.        .:.|.:.:|...|:|.:.|:..::..|......:.::..|..| .|::.::.
Zfish   835 RYVVTVKEVGDEVISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQDRPDPP-EVEIREVK 898

  Fly   957 KTKAIIEWVDGSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREVDRYTSRQ--QAEVVNLTPWS 1019
            .....:.|..|......|..|:|        .:.|.|....:.::.:..|.|  ||.::.|.|.|
Zfish   899 DRTIALRWTMGFDGNSPITGYDI--------NYKNKSASWASSQMTKDVSPQLNQATIIELHPAS 955

  Fly  1020 AYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGI 1084
            .|...:.|.|.:|...||....| :|.|..|..||::|.........:.:||.|  |.:...:|:
Zfish   956 TYNIRMFAKNQIGESRPSNELTI-TTDEAPPDGAPQDVQLEAISSQGIKVTWKP--PHKHLQNGL 1017

  Fly  1085 --HYKVFWK----------------LKGAIEWAS-DEIKKQDHMGVAVVNIPLNNYYTEYEVKVQ 1130
              .|:|.::                ..|.||..: |.:||                ||:|||:||
Zfish  1018 IRSYQVCYREFGTGGSPQYNTINVDTTGDIETLTLDNLKK----------------YTQYEVRVQ 1066

  Fly  1131 AINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSRENIRGKLIGHRLKY 1195
            |.|..|.||.||...|.:.||:|...|:..:..|......:::|..  :.:|.:.|.|:|:|:.:
Zfish  1067 AANRAGMGPTSEEITITTLEDVPSRPPENVVTTATTPETISLSWSA--LPKEALNGMLLGYRVIF 1129

  Fly  1196 WKTTHQEEDSVYYLSRTTRNWALIVGLQPDTYYFVKVMAYNAAGEGPESERFEERTYRKAPQKPP 1260
            |......|........||:....:..|:..|.|.::|:|:..||:|..||:...||....| .||
Zfish  1130 WANLPDGELGEIRNITTTKPSLELERLEKYTNYSIQVLAFTRAGDGVRSEQIYTRTKEDVP-GPP 1193

  Fly  1261 SSVHVYGINPSTVRVVW-----------RYV----SP-----SQDEEPVEGYKVRIWESDQN--- 1302
            :.|.......|.|.|.|           :|:    :|     |:.|...:.|..|:...:||   
Zfish  1194 AGVKAAASTSSVVFVSWLPPHKLNGIIRKYIVFCSNPYPTVISEFEAAPDVYFRRLTNLNQNWQY 1258

  Fly  1303 --MITANNTIVPIGQKLESYINNLTPGKSYNMRVLAYSNG----------------GDGRMSSPT 1349
              .:.|   :...|:...|.|..:.|......|:|.:|..                ||   ..||
Zfish  1259 SIWVVA---VTAAGRGNTSEIITVEPQAKAPARILTFSGTVTTPWMRDIVLPCKAVGD---PPPT 1317

  Fly  1350 LHFQMGKTTRNGA-------NTRHGHNINTALILSTL 1379
            :.:..|   .||.       ..|..|| |.:.::.|:
Zfish  1318 IKWLKG---NNGTPAPVSIDGRRSAHN-NGSFVIRTV 1350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480 18/83 (22%)
Ig 361..460 CDD:299845 33/118 (28%)
I-set 362..462 CDD:254352 32/119 (27%)
Ig 466..559 CDD:299845 23/111 (21%)
IG_like 584..657 CDD:214653 20/75 (27%)
IGc2 586..645 CDD:197706 16/61 (26%)
Ig 667..751 CDD:299845 23/96 (24%)
IG_like 676..751 CDD:214653 22/87 (25%)
IG_like 765..844 CDD:214653 23/87 (26%)
Ig 773..844 CDD:299845 22/79 (28%)
I-set 851..940 CDD:254352 15/96 (16%)
Ig 866..944 CDD:299845 13/85 (15%)
FN3 944..1043 CDD:238020 23/100 (23%)
FN3 1053..1146 CDD:238020 30/111 (27%)
fn3 1156..1244 CDD:278470 20/87 (23%)
fn3 1259..1346 CDD:278470 25/127 (20%)
dscambXP_009289749.1 I-set 132..198 CDD:254352 22/107 (21%)
I-set 225..310 CDD:254352 17/97 (18%)
IGc2 239..300 CDD:197706 13/65 (20%)
IG_like 320..400 CDD:214653 27/93 (29%)
IGc2 328..391 CDD:197706 24/73 (33%)
IG_like 417..501 CDD:214653 20/89 (22%)
Ig 424..498 CDD:143165 18/79 (23%)
IG_like 511..592 CDD:214653 22/95 (23%)
IGc2 518..576 CDD:197706 16/57 (28%)
I-set 595..685 CDD:254352 24/104 (23%)
Ig 612..682 CDD:143165 18/75 (24%)
I-set 689..785 CDD:254352 26/97 (27%)
Ig7_DSCAM 706..785 CDD:143211 22/78 (28%)
IG_like 795..883 CDD:214653 14/92 (15%)
Ig 803..890 CDD:299845 14/91 (15%)
FN3 887..980 CDD:238020 24/102 (24%)
FN3 987..1084 CDD:238020 31/114 (27%)
FN3 1092..1185 CDD:238020 22/94 (23%)
FN3 1190..1279 CDD:238020 20/92 (22%)
IGc2 1302..1367 CDD:197706 12/56 (21%)
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10075
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.100

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