DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cont and Dscam1

DIOPT Version :10

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:1369 Identity:286/1369 - (20%)
Similarity:474/1369 - (34%) Gaps:369/1369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 WVNDDNTQLVQIED--SFSMDEQV---PLENEDLHDNRFLVQNDLNNQNINNPNQFYNSLPGTVN 272
            |:..|.|.:..:..  ..|.|.::   |...||.            .|.::  .|.|..|     
  Fly    73 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDY------------RQEVH--AQVYACL----- 118

  Fly   273 QRNQNNLRGFIGPNQPYGD--NRYVRDRVVYAFSKKRDRWMFMPAYEIELNLFICESKV-LYSSD 334
            .|||            :|.  :|.|..|.|.:...:.|   ...|:.|..|..|.:..: .:.:|
  Fly   119 ARNQ------------FGSIISRDVHVRAVVSQHYEED---IHKAFVIRGNSAILKCDIPSFVAD 168

  Fly   335 NVNI---KLDDKRPYHYGLDINDMERI-PRGPYFVKQ--PND----------------TTFDVNK 377
            .||:   ..|:|..::.|.:.:....: |.|...:::  |.|                |.....|
  Fly   169 FVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 233

  Fly   378 NRLI-----------------------------NDVTLSCLANGYPTPSYTWYREVYVDDRLEYQ 413
            .||:                             ..|||.|.|..||.|.:.||:  :::.....|
  Fly   234 GRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWYK--FIEGTTRKQ 296

  Fly   414 KIDPLAQDRYTISGGNLIIYEPKQAL--DQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRSA 476
            .:  :..||.....|.|||   |.|:  |.|.|.||..|..|   .||...........:.|...
  Fly   297 AV--VLNDRVKQVSGTLII---KDAVVEDSGKYLCVVNNSVG---GESVETVLTVTAPLSAKIDP 353

  Fly   477 ETSEMNWGK-SIFCDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVDRANYSC 540
            .|..:::|: ::|.......|.....|.:         |.:.....:..|....::..|:..|.|
  Fly   354 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK---------DGKAIGHSEPVLRIESVKKEDKGMYQC 409

  Fly   541 TVQT------LVSDTGRNGPFFPLRVTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYP 599
            .|:.      ..::....|.|.|    |       :....|.:   |....|..:.|:|:|.|.|
  Fly   410 FVRNDQESAEASAELKLGGRFDP----P-------VIRQAFQE---ETMEPGPSVFLKCVAGGNP 460

  Fly   600 IPSYNWTRQGLPLQRN-------AYTINYGRVLIIQNATT---NDNGEYSCTITNPRKTLMKSIY 654
            .|..:|...|..:..|       ..|:| |.|:...|.|:   ||.|.|.|...:.......|..
  Fly   461 TPEISWELDGKKIANNDRYQVGQYVTVN-GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 524

  Fly   655 INI-------QMRPQFTIPLKDMIKDYNSDVTFICEAFAIPDANYTWYKNAERLDPANINRDRYI 712
            :|:       ||..:..:..:.:|      ||  |.....|..:..|.::...|.   |||.:.:
  Fly   525 LNVYGLPYIRQMEKKAIVAGETLI------VT--CPVAGYPIDSIVWERDNRALP---INRKQKV 578

  Fly   713 IQDNVLTIKFLEKDKDDAMYQCGAQNQ-------------------------------------- 739
            ..:..|.|:.:|::.|.|.|.|.|:||                                      
  Fly   579 FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFC 643

  Fly   740 --------LKTSFS-------------SAQLRV--LSMKPSFKKHPLESEVYAVYN--------G 773
                    :|..:|             ..|:|.  :|.|.|....|..|..:...:        |
  Fly   644 QIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAG 708

  Fly   774 NTT-----------------------------IVCDPEAAPRPKFQWKKDGQVIGS--GGHRRIL 807
            .||                             :.|..:..|:|:..|||   .:|.  |.::.:.
  Fly   709 TTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK---AVGDTPGEYKDLK 770

  Fly   808 PS-------GTLTISPTSRDDEGIYTCIASNQAGTDESHARVIVLQEIRFIETPPQ------RIV 859
            .|       |||.:....:.:||.|.|.|.|..|:..|  .||::.    ::.||:      ...
  Fly   771 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS--AVIMIS----VQAPPEFTEKLRNQT 829

  Fly   860 SKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHD----------GTGRIIVDWNRLTVHNTS 914
            ::..:...|.|||..::  .|..:|..|...|...:|          .||.:    :.|::..|.
  Fly   830 ARRGEPAVLQCEAKGEK--PIGILWNMNNMRLDPKNDNRYTIREEILSTGVM----SSLSIKRTE 888

  Fly   915 MRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWV---DGSHNGRAIRY 976
            ..|:..:.||..:|.....:..::.::..|..|..::|:..|.....:.|.   ||  |....||
  Fly   889 RSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDG--NSPLDRY 951

  Fly   977 YNIL----GRTNWNRTWVNVSTHVQAREVDR-----YTSRQQAEVVNLTPWSAYEFSVTAVNDLG 1032
              |:    .|.:|:             |:||     :|:  :|:|..|:|.:.|...:.|.|.:|
  Fly   952 --IIEFKRSRASWS-------------EIDRVIVPGHTT--EAQVQKLSPATTYNIRIVAENAIG 999

  Fly  1033 IGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKG--- 1094
            ....|....|. |.|:.|...|:|:.........:.:||.|....|.:...:.|.|.:||..   
  Fly  1000 TSQSSEAVTII-TAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNS 1063

  Fly  1095 -----AIEWASDEIKKQDHMGVAVVNIPLNN--YYTEYEVKVQAINSVGKGPESEIAVIHSAEDM 1152
                 .|.:.::|.|:.        |:.|.|  .||:|.|.:||.|.:|.||.||.....:||..
  Fly  1064 SYVFETINFITEEGKEH--------NLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGT 1120

  Fly  1153 PQVAPQKPIALAYNSTCFNVTWQPIDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWA 1217
            |...|.........|....|.|  :....|:..|.:..:::.|..:....:::..:..:|..:..
  Fly  1121 PSQPPSDTACTTLTSQTIRVGW--VSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDT 1183

  Fly  1218 LIVGLQPDTYYFVKVMAYNAAGEGPESERFEERTYRKAPQKPPSSVHVYGINPSTVRVVWRYVSP 1282
            ::.||:..|.|.::|:|..|.|:|..|.....:|....|: .|:.|....:..:.:.|.||  .|
  Fly  1184 VLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPE-APTDVKALVMGNAAILVSWR--PP 1245

  Fly  1283 SQDEEPVEGYKVRIWESDQNMITANNTIVPIGQKLESY-----INNLTPGKSYNMRVLAYSNGGD 1342
            :|....:..|.|  :...:...|...|     ||:..|     ...|...|.|...|.|.:..|:
  Fly  1246 AQPNGIITQYTV--YSKAEGAETETKT-----QKVPHYQMSFEATELEKNKPYEFWVTASTTIGE 1303

  Fly  1343 GRMS 1346
            |:.|
  Fly  1304 GQQS 1307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480 3/9 (33%)
Ig 361..466 CDD:472250 35/153 (23%)
Ig strand B 384..388 CDD:409356 3/3 (100%)
Ig strand C 397..409 CDD:409356 2/11 (18%)
Ig strand E 428..432 CDD:409356 2/3 (67%)
Ig strand F 443..448 CDD:409356 2/4 (50%)
Ig strand G 457..460 CDD:409356 1/2 (50%)
Ig 474..559 CDD:472250 14/91 (15%)
Ig strand B 485..489 CDD:409392 0/4 (0%)
Ig strand C 499..503 CDD:409392 0/3 (0%)
Ig strand E 523..527 CDD:409392 1/3 (33%)
Ig strand F 537..542 CDD:409392 2/4 (50%)
Ig strand G 553..556 CDD:409392 1/2 (50%)
Ig_3 584..644 CDD:464046 21/69 (30%)
Ig_3 660..738 CDD:464046 18/77 (23%)
Ig 756..844 CDD:472250 27/133 (20%)
Ig strand B 775..779 CDD:409358 2/32 (6%)
Ig strand C 788..792 CDD:409358 0/3 (0%)
Ig strand E 810..814 CDD:409358 3/3 (100%)
Ig strand F 824..829 CDD:409358 2/4 (50%)
Ig strand G 837..840 CDD:409358 1/2 (50%)
Ig <868..944 CDD:472250 17/85 (20%)
Ig strand C 881..885 CDD:409359 0/3 (0%)
Ig strand E 906..910 CDD:409359 1/3 (33%)
Ig strand F 920..925 CDD:409359 1/4 (25%)
Ig strand G 933..936 CDD:409359 0/2 (0%)
FN3 944..1043 CDD:238020 26/110 (24%)
FN3 1053..1146 CDD:238020 28/102 (27%)
fn3 1156..1244 CDD:394996 17/87 (20%)
fn3 1259..1346 CDD:394996 21/91 (23%)
Dscam1NP_001246162.1 IgI_1_Dscam 38..136 CDD:409547 19/93 (20%)
Ig strand A 39..42 CDD:409547
Ig strand A' 48..52 CDD:409547
Ig strand B 55..64 CDD:409547
Ig strand C 70..76 CDD:409547 1/2 (50%)
Ig strand C' 78..81 CDD:409547 1/2 (50%)
Ig strand D 87..90 CDD:409547 0/2 (0%)
Ig strand E 95..100 CDD:409547 0/4 (0%)
Ig strand F 113..121 CDD:409547 3/12 (25%)
Ig strand G 124..136 CDD:409547 4/11 (36%)
IgI_2_Dscam 246..343 CDD:409545 28/106 (26%)
Ig strand A 247..250 CDD:409545 0/2 (0%)
Ig strand A' 260..264 CDD:409545 0/3 (0%)
Ig strand B 267..274 CDD:409545 3/6 (50%)
Ig strand C 282..288 CDD:409545 2/7 (29%)
Ig strand C' 294..297 CDD:409545 0/2 (0%)
Ig strand D 303..307 CDD:409545 1/3 (33%)
Ig strand E 309..315 CDD:409545 4/8 (50%)
Ig strand F 322..330 CDD:409545 4/7 (57%)
Ig strand G 333..343 CDD:409545 3/12 (25%)
IgC2_3_Dscam 346..426 CDD:409549 12/88 (14%)
Ig strand A 347..352 CDD:409549 1/4 (25%)
Ig strand A' 355..359 CDD:409549 1/3 (33%)
Ig strand B 362..372 CDD:409549 1/9 (11%)
Ig strand C 377..383 CDD:409549 1/14 (7%)
Ig strand C' 384..387 CDD:409549 0/2 (0%)
Ig strand E 392..398 CDD:409549 1/5 (20%)
Ig strand F 405..413 CDD:409549 3/7 (43%)
Ig strand G 416..426 CDD:409549 0/9 (0%)
IgI_4_Dscam 432..527 CDD:409548 26/109 (24%)
Ig strand A 432..435 CDD:409548 2/13 (15%)
Ig strand A' 441..445 CDD:409548 1/6 (17%)
Ig strand B 448..457 CDD:409548 2/8 (25%)
Ig strand C 462..468 CDD:409548 2/5 (40%)
Ig strand C' 470..473 CDD:409548 1/2 (50%)
Ig strand D 478..486 CDD:409548 0/7 (0%)
Ig strand E 490..499 CDD:409548 2/8 (25%)
Ig strand F 506..514 CDD:409548 3/7 (43%)
Ig strand G 517..527 CDD:409548 1/9 (11%)
IgI_5_Dscam 531..618 CDD:409550 22/97 (23%)
Ig strand A 531..533 CDD:409550 0/1 (0%)
Ig strand A' 538..542 CDD:409550 0/3 (0%)
Ig strand B 545..552 CDD:409550 3/14 (21%)
Ig strand C 559..565 CDD:409550 1/5 (20%)
Ig strand C' 566..568 CDD:409550 0/1 (0%)
Ig strand D 575..579 CDD:409550 0/3 (0%)
Ig strand E 582..588 CDD:409550 2/5 (40%)
Ig strand F 596..604 CDD:409550 4/7 (57%)
Ig strand G 608..618 CDD:409550 0/9 (0%)
Ig 621..718 CDD:472250 12/96 (13%)
Ig strand B 639..643 CDD:409353 0/3 (0%)
Ig strand C 653..657 CDD:409353 1/3 (33%)
Ig strand E 684..688 CDD:409353 1/3 (33%)
Ig strand F 698..703 CDD:409353 0/4 (0%)
Ig strand G 711..714 CDD:409353 1/2 (50%)
IgI_7_Dscam 721..815 CDD:409546 22/102 (22%)
Ig strand A 721..725 CDD:409546 0/3 (0%)
Ig strand A' 730..734 CDD:409546 0/3 (0%)
Ig strand B 737..746 CDD:409546 1/8 (13%)
Ig strand C 752..758 CDD:409546 3/8 (38%)
Ig strand C' 764..767 CDD:409546 1/2 (50%)
Ig strand D 775..778 CDD:409546 0/2 (0%)
Ig strand E 780..786 CDD:409546 3/5 (60%)
Ig strand F 793..801 CDD:409546 4/7 (57%)
Ig strand G 806..815 CDD:409546 3/14 (21%)
Ig 818..916 CDD:472250 19/103 (18%)
Ig strand B 836..840 CDD:409353 1/3 (33%)
Ig strand C 849..853 CDD:409353 0/3 (0%)
Ig strand E 880..884 CDD:409353 1/3 (33%)
Ig strand F 894..899 CDD:409353 1/4 (25%)
FN3 <899..1212 CDD:442628 80/342 (23%)
Ig strand G 907..910 CDD:409353 0/2 (0%)
FN3 1222..1312 CDD:238020 23/96 (24%)
Ig <1339..1406 CDD:472250
Ig strand C 1350..1354 CDD:409358
Ig strand E 1372..1376 CDD:409358
Ig strand F 1386..1391 CDD:409358
Ig strand G 1399..1402 CDD:409358
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1893..2008 CDD:463546
Blue background indicates that the domain is not in the aligned region.

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