DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and ncam-1

DIOPT Version :9

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_741709.1 Gene:ncam-1 / 180418 WormBaseID:WBGene00017184 Length:955 Species:Caenorhabditis elegans


Alignment Length:988 Identity:196/988 - (19%)
Similarity:331/988 - (33%) Gaps:330/988 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   400 WYREVYVDDRLEYQKIDPLAQDRYTIS---GGNLIIYEPKQALDQGAYHCVAENKFGRIRSESAH 461
            |||:         .|:.|......||.   ...|:|..||.: |.|.|.|..|.: |..:..||.
 Worm    87 WYRD---------GKLIPRFGSTMTIERTYSNQLMINRPKIS-DGGKYTCKTEIQ-GEQQEVSAE 140

  Fly   462 LNFGFIMEFNLKRSAETSEMNWGKSIFCDPPQHYPDVRYYW-----------ARDYFPNFVEEDQ 515
            ::|....:|...:.::..|......|.|: .:....:..:|           .|.|  .|.|.:|
 Worm   141 IS
FVDPPKFLNVQESQHPEEGTRAEIVCE-VEGTDQLEVFWQFNGVTLDETSQRGY--EFSENNQ 202

  Fly   516 RVFV-----SRDGALYFSFIETVDRANYSCTVQTLVSDTGRNGPFFPLRVTPNSNYQALIFANTF 575
            .:::     .:|..:|     ..:.|.||......|:.||...|...:...||.|          
 Worm   203 ILYIPHFTAKKDDGIY-----NCNAAQYSSFETLSVNVTGYARPTITVFDVPNGN---------- 252

  Fly   576 PKVFPEAPVAGDEIRLECMAFGYPIPSYNWTRQG--LPLQR-NAYTINYGRVLIIQNATTNDNGE 637
                  ..:.|..|.|:|.|.|.|.|:|.|..:.  :|:.| :.:.:..| :|||::..:.|.|.
 Worm   253 ------RGIEGHTIELKCGAVGKPKPTYKWFFEDDEVPIARSDKHNVEEG-LLIIESLNSEDAGT 310

  Fly   638 YSCTITNPRKTLMKSIYINIQMRPQFTIPLKDMIKDYNSDVTFIC----------------EAFA 686
            |.|...|...:..::..:.:.::|:..:..:.::|: ..||..:|                ..||
 Worm   311 YKCVANNTVGSNERTFDLAVFLKPKVDLKHEYVVKE-GDDVELVCSYHGEGHVTAKFVSGHSEFA 374

  Fly   687 I--------------PDANYT-------------------WYKNAERLDPA-------------- 704
            :              |::|.:                   ..|:||.::..              
 Worm   375 VRNEAVSAGNSEEIRPESNESEEVTTTSENSEETSTQDEVELKSAENVNDEEDHTSQQDDGEQDE 439

  Fly   705 ------------NINRDRYII--QDN--VLTIKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLS 753
                        ::|..|..:  ::|  :||||.:..: |.|.|.|...|...|.....|:.:: 
 Worm   440 QEESKKWKRFADDVNNQRISVRAEENKLILTIKSISLE-DAADYTCAVSNDAGTVNKVTQVGII- 502

  Fly   754 MKPSFKKHPLESEVYA-----VYNGNT-TIVCDPEAAPRPKFQWKKDG-QVIGSGGHRRILPSGT 811
                   ||.....|.     .::||| ::.||..|.|.||:.|.|:| :|..:|...:|...|:
 Worm   503 -------HPPTLRHYTGPHIRSFDGNTVSVYCDVSAVPSPKWHWFKNGKEVEANGVSIQIFTQGS 560

  Fly   812 ---LTISP-TSRDDEGIYTCIASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEA 872
               ||:.. ...|:.|:|||.|.|..|..|....||   ::....||..           ::|: 
 Worm   561 STKLTLENFDGSDNFGVYTCRADNGVGQLEKQIDVI---KVVSPATPSG-----------MNCK- 610

  Fly   873 AFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEISSKTS 937
                    ..|:.:.|                                 :|..:|.:.|      
 Worm   611 --------KMVYPNYG---------------------------------KCSFESDIYE------ 628

  Fly   938 VSIEGAPGAPGGVQVIQISKTKAIIEWVDGSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREV- 1001
             ..|..|      |.:::...|  :|.::..:|                  |    :|.|...| 
 Worm   629 -KEESKP------QTMELLVAK--LEEMESDYN------------------W----SHAQPVSVP 662

  Fly  1002 --DRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKI 1064
              |..|      :.|||..:.|.....|||:.|....|....:.:|   .|: ||:..|....|.
 Worm   663 FEDDLT------IPNLTSNTQYVIKARAVNEAGSSEYSEEISLETT---DPW-APQAPGSVAMKC 717

  Fly  1065 GD-LTITWDPLLPQEQHSHGIHYKVF---WKLK---GAIEWASDEIKKQDHMGVAVVNIPLNNYY 1122
            .| .|::||  .|.:..|..:.:||.   .|.|   ..:|..|||....:...........|:  
 Worm   718 SDYCTVSWD--TPNDHGSPLLKFKVTIQEMKYKTDDDEVEEKSDEKSNNNSEETETTTSDDND-- 778

  Fly  1123 TEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSRENIRGK 1187
             |.|...::|.......|.|..:.|  ||..::.|..|                           
 Worm   779 -ETEASNESIEIKENSEEQETTLAH--EDSAEILPTDP--------------------------- 813

  Fly  1188 LIGHRLKYWKTTHQEEDSVYYLS------RTTRNWALIVGLQPDTYYFVKVMAYNAAGEGPESE- 1245
                     .|:.:.::.|.|.|      .:..|...:..::..:||.:.|.|.|..|:|..:| 
 Worm   814 ---------STSVERDEMVPYGSLLVLNVDSEENQVQLTNIKQHSYYKISVAAENEKGQGEPAEI 869

  Fly  1246 ---------RFEE 1249
                     ::||
 Worm   870 DFQTDDSPTKYEE 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..460 CDD:299845 17/62 (27%)
I-set 362..462 CDD:254352 19/64 (30%)
Ig 466..559 CDD:299845 19/108 (18%)
IG_like 584..657 CDD:214653 21/75 (28%)
IGc2 586..645 CDD:197706 20/61 (33%)
Ig 667..751 CDD:299845 25/162 (15%)
IG_like 676..751 CDD:214653 24/153 (16%)
IG_like 765..844 CDD:214653 29/89 (33%)
Ig 773..844 CDD:299845 28/76 (37%)
I-set 851..940 CDD:254352 8/88 (9%)
Ig 866..944 CDD:299845 7/77 (9%)
FN3 944..1043 CDD:238020 20/101 (20%)
FN3 1053..1146 CDD:238020 24/99 (24%)
fn3 1156..1244 CDD:278470 14/93 (15%)
fn3 1259..1346 CDD:278470
ncam-1NP_741709.1 IG 64..142 CDD:214652 19/65 (29%)
Ig 69..140 CDD:143165 18/63 (29%)
IG_like 153..236 CDD:214653 15/90 (17%)
Ig 160..222 CDD:299845 10/69 (14%)
IG_like 256..330 CDD:214653 21/74 (28%)
IGc2 256..320 CDD:197706 21/64 (33%)
IG_like <445..499 CDD:214653 13/54 (24%)
Ig <445..498 CDD:143165 13/53 (25%)
IG_like 520..596 CDD:214653 27/75 (36%)
IGc2 520..587 CDD:197706 25/66 (38%)
FN3 <652..701 CDD:238020 16/76 (21%)
FN3 <817..873 CDD:238020 12/55 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10075
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.