DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and lad-2

DIOPT Version :9

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_001023496.1 Gene:lad-2 / 177078 WormBaseID:WBGene00002243 Length:1187 Species:Caenorhabditis elegans


Alignment Length:1046 Identity:275/1046 - (26%)
Similarity:455/1046 - (43%) Gaps:133/1046 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 PYFVKQPNDTTF------DVNKNRLINDVTLSCLANGYPTPSYTWYR--EVYVDDRLEYQKIDPL 418
            |..::|..:..:      |:.||||    ||.|.|: ..|..|:|.:  |.:|.|.      :.:
 Worm    25 PKLLEQSGEEVWYHLDDEDLLKNRL----TLRCEAD-ENTDRYSWLKDGEPFVIDS------EDV 78

  Fly   419 AQDRYTISGGNLIIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRSAETSEMNW 483
            ..::.:.||.  |::....|..||.|.|.|.|.||...|...||..|.:..|. ||..:...:..
 Worm    79 LWEKESQSGS--IVFTKPHASHQGYYQCFASNIFGTALSNKMHLRLGSLEHFP-KRDVKLLRVKE 140

  Fly   484 GKSIF--CDPPQHYPDVRYYWA-RDYFPNFVEE---DQRVFVSRDGALYFSFIETVD-RAN--YS 539
            |:|:.  |.||:..||.:..|. |....:.|.|   .:.:.|..:|.|:||.:|..| :|.  |.
 Worm   141 GESLTLNCTPPRGTPDPKIVWLYRSLDDSSVIETIRSRHITVDNEGHLHFSSVELSDGKATLVYE 205

  Fly   540 CTVQT-LVSDTGRNGPFFPLRVTPNSNYQALIFANTFP----KVFP-EAPV-AGDEIRLECMAFG 597
            |...: ::....|:|....|.:.|:.:       .:.|    .|.| |..| ||.:::|:|:..|
 Worm   206 CAATSPVLRGEYRSGDRIQLDIEPSQD-------KSHPVKKMSVSPSEVTVRAGGQLKLQCIFGG 263

  Fly   598 YPIPSYNWTR-QG-LPLQR----NAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYIN 656
            .|:|:..|:: .| ||..|    .::..::||.||::|...:|.|.|.|.    .:.|:.::.:.
 Worm   264 RPLPTIFWSKIDGELPKSRIKDLTSHESDFGRSLIVENVHPDDAGAYECR----GRHLVHTVNVR 324

  Fly   657 IQMRPQFTI-PLKDMIKDYNSDVTFICEAFAIPDANYTWYKNAERL-DPANINRDRYIIQDNVLT 719
            :...|.:.. |.:|:.....|.....|.|...|....||..|.:.| :.|..:|...:....:|.
 Worm   325 VMAAPFWEFDPPRDISLPEESTGELECLAGGQPTPIITWSMNGKFLHELAEDSRRVLLDHGRILR 389

  Fly   720 IKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTTIVCDPEAA 784
            ::.|..|.|..:|||.|.|.|...|::|.:.|.:..|.|:. |.......|.:....:.||.:||
 Worm   390 VRNLNHDLDTGVYQCNASNPLGYVFANAFVHVRAHAPFFRM-PAARHWKVVLHSTVVLDCDVDAA 453

  Fly   785 PRPKFQW----KKDGQVIGSGGHRRILPSGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIVL 845
            |....:|    .:..||:  .|..::.|:.|..:...:..|||:|.|..||:.|.:.:..|:.|.
 Worm   454 PEAMVRWVDADDRPLQVV--EGKNKLFPNHTFMVYDVNSADEGLYYCNVSNKYGINRATNRLQVF 516

  Fly   846 QEIRFIETP-PQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLT 909
            :...|:..| |:|::.:..:...:.|||..|..|.|.|.|..||:||..:.  ...|:.|  ||.
 Worm   517 KPTYFVRIPTPKRLILEAGETAEVFCEAVADPRLPIRYQWTINGKVLTESQ--YYEILPD--RLR 577

  Fly   910 VHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWVDGSHNGRAI 974
            ..:...|.:|..:|...:.|:...:...:.::..|..| .|:....|:.||.::||..|.:|.:|
 Worm   578 FRSVRGRHSGIIDCAAITDVDVKLASMQLIVKDVPAHP-VVETAHCSERKATVKWVAASDHGDSI 641

  Fly   975 RYYNI-----LGRTNWNRTWVNVSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVN----- 1029
            :.|.:     ..:..|......|:.:.:..|||          :.||||..|.|.|.|||     
 Worm   642 KKYIVEMFTDFKKNEWEVINEEVNVNKETFEVD----------ITLTPWVNYTFRVVAVNSHGRS 696

  Fly  1030 DLGI-GTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLK 1093
            |:.| |.|........|....||..|..|.|.|.:..:|.|:|.||.....::..:.|.|.:||.
 Worm   697 DMKIDGQPKEDWLTCQTRPSFPYTNPTGVKGEGTEPDNLVISWKPLDRYYWNAPNMQYLVRYKLD 761

  Fly  1094 GAIE-WASDEIKKQDHMGVAVVNIPLNNYYTEYEVKVQAINSVGKG-PESEIAVIHSAEDMPQVA 1156
            ..|. |.  |...:|.:....: |.....:.:|.::||::||||.. .|.||....|.||:|..|
 Worm   762 EPIHGWT--EFLVEDSLANFTI-IRDQPTFRKYLIQVQSVNSVGPSIVEPEIHHGWSGEDVPDEA 823

  Fly  1157 PQK-PIALAYNSTCFNVTWQPIDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWALIV 1220
            |:. .|....|.|..|.||.|:|.:  .:.|..:|:.::|||.           ..|.|.:::.:
 Worm   824 PRDFHIDTQINFTTINFTWNPVDAN--TVNGHFVGYEIEYWKA-----------ENTIRKYSIKI 875

  Fly  1221 GLQPDTYYFVKVMAYNAAGEGPESERFEERTYRKA---------PQKPPSSVH---VYGINPSTV 1273
               |....:..:.:::|........|...:..|.|         |:.||..||   ||.:..:.:
 Worm   876 ---PANSTYKVINSFHAVTNYSAHIRTRNKRLRSAPSDYVSFAMPEGPPGKVHNLRVYSVGSTAI 937

  Fly  1274 RVVWRYVSPSQDEEPVEGYKVRIWESDQNMITANNTIVPIGQKLESYINNLT-PGKSYNMRVLAY 1337
            .:.|.  :|.|....:.||.:. :::::|  ....|.|...||  .|::..: |...|.:.|.|.
 Worm   938 LLQWD--APLQPNGRIRGYFIS-FQNEKN--ETEETYVIHRQK--HYLHEKSEPDTGYKVSVWAE 995

  Fly  1338 SNGGDG 1343
            :..|:|
 Worm   996 TRAGEG 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..460 CDD:299845 30/105 (29%)
I-set 362..462 CDD:254352 30/107 (28%)
Ig 466..559 CDD:299845 26/102 (25%)
IG_like 584..657 CDD:214653 23/79 (29%)
IGc2 586..645 CDD:197706 20/64 (31%)
Ig 667..751 CDD:299845 23/84 (27%)
IG_like 676..751 CDD:214653 22/75 (29%)
IG_like 765..844 CDD:214653 21/82 (26%)
Ig 773..844 CDD:299845 20/74 (27%)
I-set 851..940 CDD:254352 23/89 (26%)
Ig 866..944 CDD:299845 20/77 (26%)
FN3 944..1043 CDD:238020 31/109 (28%)
FN3 1053..1146 CDD:238020 28/94 (30%)
fn3 1156..1244 CDD:278470 19/88 (22%)
fn3 1259..1346 CDD:278470 23/89 (26%)
lad-2NP_001023496.1 IG_like 48..116 CDD:214653 24/80 (30%)
Ig 49..121 CDD:299845 25/84 (30%)
Ig 124..214 CDD:299845 24/90 (27%)
IG_like 244..325 CDD:214653 25/84 (30%)
Ig 255..325 CDD:299845 20/73 (27%)
I-set 335..421 CDD:254352 24/85 (28%)
Ig4_L1-NrCAM_like 344..422 CDD:143179 22/77 (29%)
IG_like 438..515 CDD:214653 21/78 (27%)
Ig 443..516 CDD:299845 20/74 (27%)
IG_like 527..608 CDD:214653 22/84 (26%)
Ig 535..>593 CDD:299845 19/61 (31%)
FN3 610..697 CDD:238020 27/97 (28%)
FN3 721..804 CDD:238020 25/85 (29%)
fn3 823..909 CDD:278470 22/101 (22%)
FN3 921..1010 CDD:238020 22/88 (25%)
FN3 1016..1108 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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