DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and cntn4

DIOPT Version :10

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_001135636.1 Gene:cntn4 / 100216195 XenbaseID:XB-GENE-492899 Length:1028 Species:Xenopus tropicalis


Alignment Length:1052 Identity:321/1052 - (30%)
Similarity:504/1052 - (47%) Gaps:78/1052 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 RGPYFVKQPNDTTFDV-NKNRLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLAQDRY 423
            :||.|.::|.:..|.: :::|.:.   |.|...|:|.|...|        |:....:|.....||
 Frog    23 QGPVFTQEPPNINFPLDSEDRTLR---LVCEVQGHPKPVVRW--------RVNGTLMDEAQDYRY 76

  Fly   424 TISGGNLIIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLK-RSAETSEMNWGKSI 487
            .:...:|||..|.:..|.|.:.|.|.|..|.|.|..|::.|.::..|..: ||..:.....|..:
 Frog    77 RVLDRSLIIASPDRNRDVGTFQCEATNSLGTILSREAYVQFSYLDSFQTRTRSTVSVREGQGMVL 141

  Fly   488 FCDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSR-DGALYFSFIETVDRANYSCTVQTLVSDTGR 551
            .|.||.|..::.|.|..:.:|.||::|.|.|||: .|.||.:.:|..|..||:|.|...|::|..
 Frog   142 LCGPPAHSGELVYAWIFNEYPPFVQQDNRRFVSQVTGNLYIAKVEPSDAGNYTCVVTNTVTNTRE 206

  Fly   552 NGPFFPLRVTPNSNYQALIFANTFPKV---FPEA-PVA-GDEIRLECMAFGYPIPSYNWTR-QGL 610
            .||..||.:..:.     :.....||:   |||: |.| |..::|||.|.|.|:|:..|.| .|.
 Frog   207 LGPSTPLTLRTDG-----VMGEYEPKIEVHFPESVPSAKGSTVKLECFALGNPVPTITWRRADGK 266

  Fly   611 PLQRNAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPLKDMIKDYN 675
            |:.|.........||.|.|....|.|.|.|...|.|...|....:.....|.:...:.|......
 Frog   267 PISRKVRRHRSSGVLEIPNFQQEDAGPYECVAENTRGKNMVRGQLTYFAPPTWVQKINDAHIAIE 331

  Fly   676 SDVTFICEAFAIPDANYTWYKNAERLDPANINRDRYIIQDNVLTIKFLEKDKDDAMYQCGAQNQL 740
            .::.:.|:|...|.|:|||.||.:||.    ::.|..|....|||..: ...|..||||.|:|:.
 Frog   332 ENILWECKASGRPKASYTWLKNGQRLQ----SKGRLQIDHGSLTITSV-NISDSGMYQCLAENKH 391

  Fly   741 KTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKFQWKKDGQVIGSGGHRR 805
            .|.:|||:|||:::.|.|.|..::........|:..|.|.|:|:|:|...|||..::........
 Frog   392 GTIYSSAELRVIAVGPDFSKGFVKRVTLGKVGGSVLIECKPKASPKPSITWKKGKELQRESSRIS 456

  Fly   806 ILPSGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHC 870
            ||..|||.||..::.|.|.|||.|||..||..|...::|....:.: .||..:.....:.|.|.|
 Frog   457 ILDDGTLKISNLTKADAGSYTCTASNHFGTASSTGTLVVKDPTQVL-VPPSSMDVTVGESIVLPC 520

  Fly   871 EAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNR---------LTVHNTSMRDAGDYECVVK 926
            :.:.|..|||::.|..||:::....||.     .:.|         |.:.:..::.||.|.|:|.
 Frog   521 QVSHDHSLDISFSWVFNGQLIDFQKDGE-----HFERVGGQDSAGDLMIRSIQLKHAGKYICLVH 580

  Fly   927 SAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWVDGSHNGRAIRYYNILGRTNWNRTWVN 991
            ::|:::|:...:.:.|.||.|..:.|.:|:.|.|.:.|:.|..|...|..|::..||.::..|..
 Frog   581 TSVDKLSAGADLIVRGPPGPPDALTVEEITDTTAQLSWMPGVDNHSPIIMYSVQARTPFSVGWQA 645

  Fly   992 VSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRN 1056
            |||..:..:...:|    |.||.|:||..|||.|.|:|::|||.||.||....|.|..|.:.|.|
 Frog   646 VSTVPEVVDGRSFT----ATVVGLSPWVEYEFRVIAINEIGIGEPSPPSDKRRTEEALPEVTPAN 706

  Fly  1057 VGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNNY 1121
            |.||||..|:|.|||:|:..:.|:..|..|.|.::..|.|.|....:...|.......|..|.. 
 Frog   707 VSGGGGSKGELVITWEPVPEELQNGGGFGYVVAFRPFGTISWMQTVVASADSSRYVYRNESLPP- 770

  Fly  1122 YTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSRENIRG 1186
            ::.|||||...|:.|:||.|.:.|::|||:.|..||....:.:..:....|:|..:..|..  :|
 Frog   771 FSPYEVKVGVYNNRGEGPFSPLTVVYSAEEEPGRAPAGVFSRSLTAWDIEVSWIAVPGSLS--KG 833

  Fly  1187 KLIGHRLKYWKTTHQEEDSVYYLSRTTRNWALIVGLQPDTYYFVKVMAYNAAGEGPESERFEERT 1251
            ::.|:.::|||...:|:::....:...:....:..||..|.|.:.|.|||:||.||.|......|
 Frog   834 RIQGYEVRYWKQNEKEQNARKLRTLGNQTSTKLSHLQGHTLYHLNVRAYNSAGTGPASTTVNVTT 898

  Fly  1252 YRKAPQKPPSSVHVYGINPSTVRVVWRYVSPSQDEEPVEGYKVRI-WE--SDQNMITANNTIVPI 1313
            .:..|.:||.:: ::..:.|.:.:.|..|:..:||..|:||:|.. |.  ...::|..|.|.|.:
 Frog   899 RKPPPSQPPGNI-IWNSSNSKIILNWDQVTAQEDESEVKGYRVLYRWNRPGGASVIETNQTSVEL 962

  Fly  1314 GQKLESYINNLTPGKSYNMRVLAYSNGGDGRMSSP------TLHFQMGKTTRNGANTRHGHNINT 1372
                     :|...:.|.:.:.:.|.||:|..|.|      :..:..|    :||:|   .|..|
 Frog   963 ---------SLPYDEDYIIEIRSISEGGEGSSSEPIRIPRISNAYAQG----SGAST---SNACT 1011

  Fly  1373 ALILSTLLLIST 1384
            ...:|||::..|
 Frog  1012 LSAISTLMISLT 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..466 CDD:472250 30/105 (29%)
Ig strand B 384..388 CDD:409356 1/3 (33%)
Ig strand C 397..409 CDD:409356 1/11 (9%)
Ig strand E 428..432 CDD:409356 1/3 (33%)
Ig strand F 443..448 CDD:409356 1/4 (25%)
Ig strand G 457..460 CDD:409356 1/2 (50%)
Ig 474..559 CDD:472250 31/85 (36%)
Ig strand B 485..489 CDD:409392 0/3 (0%)
Ig strand C 499..503 CDD:409392 1/3 (33%)
Ig strand E 523..527 CDD:409392 2/3 (67%)
Ig strand F 537..542 CDD:409392 3/4 (75%)
Ig strand G 553..556 CDD:409392 2/2 (100%)
Ig_3 584..644 CDD:464046 22/61 (36%)
Ig_3 660..738 CDD:464046 24/77 (31%)
Ig 756..844 CDD:472250 31/87 (36%)
Ig strand B 775..779 CDD:409358 1/3 (33%)
Ig strand C 788..792 CDD:409358 0/3 (0%)
Ig strand E 810..814 CDD:409358 3/3 (100%)
Ig strand F 824..829 CDD:409358 3/4 (75%)
Ig strand G 837..840 CDD:409358 1/2 (50%)
Ig <868..944 CDD:472250 21/84 (25%)
Ig strand C 881..885 CDD:409359 0/3 (0%)
Ig strand E 906..910 CDD:409359 2/12 (17%)
Ig strand F 920..925 CDD:409359 2/4 (50%)
Ig strand G 933..936 CDD:409359 1/2 (50%)
FN3 944..1043 CDD:238020 38/98 (39%)
FN3 1053..1146 CDD:238020 33/92 (36%)
fn3 1156..1244 CDD:394996 23/87 (26%)
fn3 1259..1346 CDD:394996 22/89 (25%)
cntn4NP_001135636.1 Ig 24..119 CDD:472250 30/105 (29%)
Ig strand B 45..49 CDD:409353 1/6 (17%)
Ig strand C 58..62 CDD:409353 1/11 (9%)
Ig strand E 81..85 CDD:409353 1/3 (33%)
Ig strand F 96..101 CDD:409353 1/4 (25%)
Ig strand G 110..113 CDD:409353 1/2 (50%)
Ig 128..213 CDD:472250 30/84 (36%)
Ig strand B 139..143 CDD:409353 0/3 (0%)
Ig strand C 153..157 CDD:409353 1/3 (33%)
Ig strand E 178..182 CDD:409353 2/3 (67%)
Ig strand F 192..197 CDD:409353 3/4 (75%)
Ig strand G 208..211 CDD:409353 2/2 (100%)
IgI_3_Contactin 226..314 CDD:409357 31/87 (36%)
Ig strand A 226..231 CDD:409357 2/4 (50%)
Ig strand A' 234..239 CDD:409357 2/4 (50%)
Ig strand B 242..251 CDD:409357 3/8 (38%)
Ig strand C 257..261 CDD:409357 0/3 (0%)
Ig strand C' 264..266 CDD:409357 0/1 (0%)
Ig strand D 275..278 CDD:409357 0/2 (0%)
Ig strand E 279..284 CDD:409357 2/4 (50%)
Ig strand F 292..300 CDD:409357 3/7 (43%)
Ig strand G 303..314 CDD:409357 1/10 (10%)
Ig 319..402 CDD:472250 29/87 (33%)
Ig strand B 334..338 CDD:409353 0/3 (0%)
Ig strand C 347..351 CDD:409353 2/3 (67%)
Ig strand E 368..372 CDD:409353 1/3 (33%)
Ig strand F 382..387 CDD:409353 4/4 (100%)
Ig strand G 395..398 CDD:409353 1/2 (50%)
Ig5_Contactin 407..495 CDD:409358 31/87 (36%)
Ig strand A 407..412 CDD:409358 2/4 (50%)
Ig strand A' 415..420 CDD:409358 0/4 (0%)
Ig strand B 424..431 CDD:409358 2/6 (33%)
Ig strand C 439..443 CDD:409358 0/3 (0%)
Ig strand D 457..460 CDD:409358 2/2 (100%)
Ig strand E 461..466 CDD:409358 3/4 (75%)
Ig strand F 474..482 CDD:409358 5/7 (71%)
Ig strand G 488..495 CDD:409358 1/6 (17%)
Ig6_Contactin-4 497..598 CDD:409439 24/106 (23%)
Ig strand A 497..503 CDD:409439 0/6 (0%)
Ig strand A' 506..511 CDD:409439 0/4 (0%)
Ig strand B 514..522 CDD:409439 3/7 (43%)
Ig strand C 531..535 CDD:409439 0/3 (0%)
Ig strand D 556..559 CDD:409439 0/2 (0%)
Ig strand E 560..564 CDD:409439 1/3 (33%)
FN3 572..>949 CDD:442628 125/384 (33%)
Ig strand F 573..580 CDD:409439 3/6 (50%)
Ig strand G 587..591 CDD:409439 1/3 (33%)
FN3 598..690 CDD:238020 36/95 (38%)
Blue background indicates that the domain is not in the aligned region.

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