DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and zic2a

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_571633.1 Gene:zic2a / 58077 ZFINID:ZDB-GENE-000710-4 Length:445 Species:Danio rerio


Alignment Length:336 Identity:78/336 - (23%)
Similarity:105/336 - (31%) Gaps:126/336 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DGDFSSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAATASL 121
            |.|.|.|.:|...|::....    .|||......|:.....||    .:| ::.|..|||...|.
Zfish    29 DRDLSLAQNSFVDSAHMGAF----KLNHDLSPGQSSAFTSQAP----GYP-AAALGAHAAHVTSY 84

  Fly   122 A--PPNQHAPFLSAASDLYYAAAAAAAAAASTPTA------------------------------ 154
            |  |.|....||..:.....::.|....|...|||                              
Zfish    85 ASSPFNSTRDFLFRSRGFGESSPAGGQHALFGPTAGSLHHSHTDSQGHILFPGIHEQHGSHGSPN 149

  Fly   155 ---------VPG--FG------------MDPFTMGLMEQEYA---------------------RV 175
                     :||  ||            .||::...:..:|.                     |.
Zfish   150 VLNGQMRLGLPGEVFGRSDQYHQVSSPRTDPYSAAQLHNQYGSMNMNMGMNMAAHHHHPGAFFRY 214

  Fly   176 MAEDAQLKAL-----------NSRKQRPKKF----------------------------KCPNCD 201
            |.:....:.|           |.:|...|.|                            :||...
Zfish   215 MRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNHICFWEECPRES 279

  Fly   202 VAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPC--SACGKKFGR 264
            ..|....:|..|||:||||:||.|....|||.|.|:|.|..|||.|||.:|:.|  ..|.::|..
Zfish   280 KPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDRRFAN 344

  Fly   265 RDHLKKHMKTH 275
            ....||||..|
Zfish   345 SSDRKKHMHVH 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 31/95 (33%)
C2H2 Zn finger 197..217 CDD:275368 7/19 (37%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 7/23 (30%)
C2H2 Zn finger 255..275 CDD:275368 7/21 (33%)
zic2aNP_571633.1 zf_ZIC 218..263 CDD:436441 5/44 (11%)
C2H2 Zn finger 275..295 CDD:275368 7/19 (37%)
SFP1 <297..381 CDD:227516 27/59 (46%)
C2H2 Zn finger 303..325 CDD:275368 11/21 (52%)
C2H2 Zn finger 333..355 CDD:275368 7/21 (33%)
C2H2 Zn finger 363..383 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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