DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and zic2

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001017025.2 Gene:zic2 / 549779 XenbaseID:XB-GENE-482654 Length:501 Species:Xenopus tropicalis


Alignment Length:340 Identity:79/340 - (23%)
Similarity:108/340 - (31%) Gaps:134/340 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 ASSSFGHDCDGDFSSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQ-SSPL 111
            |.:|..||       .|....:|:.:|::.|              |....|||..::... :||.
 Frog    89 AGASGPHD-------LSPPGQTSAFTSQAGY--------------PASALAPHAAYTGAAFNSPR 132

  Fly   112 D------THAAATASLAPPNQHAPFLSAASDLY--------------------------YAAAAA 144
            |      ..|..||: |...||..|...|..|:                          :|||:.
 Frog   133 DFLFRGRGFAEGTAA-AGGGQHGLFGPPAGSLHHHPHHHQLSHGEHPQGHILFPGIHDQHAAASQ 196

  Fly   145 AAAAASTPTAVPG--FGM------------DPFTMGLMEQEYA---------------------- 173
            .|........:||  ||.            ||:|...:..:||                      
 Frog   197 NALGGQMRLGLPGEMFGRTEQYRQVSSPRGDPYTAAQLHNQYAPMNMGMNMAAHHHHHHHHHPGA 261

  Fly   174 --RVMAEDAQLKAL-----------NSRKQRPKKF----------------------------KC 197
              |.|.:....:.|           |.:|...|.|                            :|
 Frog   262 FFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNHICFWEEC 326

  Fly   198 PNCDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPC--SACGK 260
            ......|....:|..|||:||||:||.|....|||.|.|:|.|..|||.|||.:|:.|  ..|.:
 Frog   327 SREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDR 391

  Fly   261 KFGRRDHLKKHMKTH 275
            :|......||||..|
 Frog   392 RFANSSDRKKHMHVH 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 30/95 (32%)
C2H2 Zn finger 197..217 CDD:275368 6/19 (32%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 7/23 (30%)
C2H2 Zn finger 255..275 CDD:275368 7/21 (33%)
zic2NP_001017025.2 zf_ZIC 269..314 CDD:436441 5/44 (11%)
COG5048 <284..438 CDD:227381 39/123 (32%)
C2H2 Zn finger 324..346 CDD:275368 6/21 (29%)
C2H2 Zn finger 354..376 CDD:275368 11/21 (52%)
C2H2 Zn finger 384..406 CDD:275368 7/21 (33%)
C2H2 Zn finger 414..434 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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