DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and zic3

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001005691.1 Gene:zic3 / 448197 XenbaseID:XB-GENE-480431 Length:441 Species:Xenopus tropicalis


Alignment Length:355 Identity:90/355 - (25%)
Similarity:121/355 - (34%) Gaps:129/355 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 TQRQAATSAAPRTVKQEP-EAITIKTELASSSFGHDCDGDFSSASSSASSSSNSSKSCYEEALNH 84
            :.|.|.....|.|   || .|...|...||    ||       .|||.||:.....|.|..:|.|
 Frog    28 SNRDAGMGLNPFT---EPSHAAAFKLSPAS----HD-------LSSSQSSAFTPQASGYANSLGH 78

  Fly    85 -----SSY-------TR--------------TST------------PLLDAAP-HPVFS--HPQS 108
                 .||       ||              ||.            |.:...| |.:|.  |.||
 Frog    79 HAGQVPSYGGAAFNSTRDFLFRNRNSGIADSTSAGGQHGLFASHGPPGIGEPPGHLIFPGLHEQS 143

  Fly   109 SPLDTHAAATASLAPPNQHA-----------PFLSAASDL--YYAAA----------AAAAAAAS 150
            |   :|.::...:.....|.           |:.:..|..  :||||          :...||..
 Frog   144 S---SHTSSNGHVVNGQMHLGLRGDIFGRPDPYRAVPSPRTDHYAAAQFHNYNHMNMSMNVAAHH 205

  Fly   151 TPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLKALNSRKQRPKKF-------------------- 195
            .|.|...:...|     ::||.:....|::.:       .||:|.                    
 Frog   206 GPGAFFRYMRQP-----IKQELSCKWLEESPM-------NRPQKTCDRTFSSMHELVTHMTMEHV 258

  Fly   196 -------------KCPNCDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIH 247
                         :||....:|....:|..|||:||||:||.|....|||.|.|:|.|..|||.|
 Frog   259 GGPEQTNHICYWEECPRGGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 323

  Fly   248 TGLRPYPC--SACGKKFGRRDHLKKHMKTH 275
            ||.:|:.|  ..|.::|......||||..|
 Frog   324 TGEKPFKCEFEGCDRRFANSSDRKKHMHVH 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 30/100 (30%)
C2H2 Zn finger 197..217 CDD:275368 7/19 (37%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 7/23 (30%)
C2H2 Zn finger 255..275 CDD:275368 7/21 (33%)
zic3NP_001005691.1 zf_ZIC 216..261 CDD:436441 7/56 (13%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
SFP1 <295..379 CDD:227516 27/59 (46%)
C2H2 Zn finger 301..323 CDD:275368 11/21 (52%)
C2H2 Zn finger 331..353 CDD:275368 7/21 (33%)
C2H2 Zn finger 361..381 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..441
Blue background indicates that the domain is not in the aligned region.

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