DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and sr

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster


Alignment Length:318 Identity:96/318 - (30%)
Similarity:136/318 - (42%) Gaps:82/318 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PWDTQRQAATSAA-------------PRTVKQEPEAITIKTELASSSFGHDCDGDFSSASSSASS 69
            |:|..|.||.:||             |..:||.|.:      .|.:|.|....||..|:      
  Fly   827 PYDDGRAAAAAAAQHAELLGLTMDCTPLLLKQPPPS------YAGASAGFPGLGDLHSS------ 879

  Fly    70 SSNSSKSCYEEALNHSSYTRTSTPLLDAAPHP-----------------------VFSHPQSSPL 111
                    :|:.|....|.| |.|.......|                       |...|.||..
  Fly   880 --------HEQQLQQQQYVR-SQPKYQWLDSPADYAQQQQQVQQVQQQQQQQQTLVLPGPTSSAS 935

  Fly   112 DTHAAATASLAPPNQHAPFLSAASD-LYY------AAAAAAAAAASTPTAVPGFGMDPFTM---G 166
            .:: ||...|.|..::.|.:..:|: ..|      ::||||||||:...||......|.|.   .
  Fly   936 SSN-AALGVLIPKQENYPDMQPSSNGTGYSGGSGGSSAAAAAAAAAAAAAVQLAEYSPSTSKGHE 999

  Fly   167 LMEQEYARVMAEDAQLKALNSRK--QRPKK-------FKCP--NCDVAFSNNGQLKGHIRIHTGE 220
            ::.|.|.: .....:|..:..||  .||.|       :.||  |||..||.:.:|..|||||||:
  Fly  1000 ILSQVYQQ-STVPLKLVPVKPRKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQ 1063

  Fly   221 RPFKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPCSACGKKFGRRDHLKKHMKTHMPQ 278
            :||:|.:  |.::|:|::.||.|.|.|||.:|:.|..||:||.|.|..|:|.|.|:.|
  Fly  1064 KPFQCRI--CMRSFSRSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVHLKQ 1119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 32/67 (48%)
C2H2 Zn finger 197..217 CDD:275368 11/21 (52%)
C2H2 Zn finger 225..247 CDD:275368 8/21 (38%)
zf-C2H2 253..275 CDD:395048 10/21 (48%)
C2H2 Zn finger 255..275 CDD:275368 10/19 (53%)
srNP_001262693.1 zf-C2H2 1036..1060 CDD:395048 11/23 (48%)
C2H2 Zn finger 1038..1060 CDD:275368 11/21 (52%)
zf-H2C2_2 1052..1077 CDD:463886 13/26 (50%)
C2H2 Zn finger 1068..1088 CDD:275368 8/21 (38%)
zf-H2C2_2 1080..1105 CDD:463886 13/24 (54%)
C2H2 Zn finger 1096..1116 CDD:275368 10/19 (53%)

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