DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hkb and zic3

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001001950.1 Gene:zic3 / 368263 ZFINID:ZDB-GENE-030708-2 Length:448 Species:Danio rerio


Alignment Length:343 Identity:79/343 - (23%)
Similarity:116/343 - (33%) Gaps:108/343 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DTQRQAATSAAPRT---VKQEPEAITIKTELASSSFGHDCDGDFSSASSSASSSS------NSSK 75
            |:...||...:|.|   ...:..|.|.:....:::.||...|...|.:..|.:|:      |...
Zfish    41 DSSHSAAFKISPVTHDIASSQTSAFTPQATGYAAALGHHHGGQVGSYAGGAFNSTRDFLFRNRGA 105

  Fly    76 SCYEEA---LNHSSYTRTSTPL------LDAAPHPVFS--HPQSSPLDTHAAATASLAPPNQHAP 129
            ...|.|   ..|..:..::..|      .|...|.:|.  |.||.   :|.:....:.....|  
Zfish   106 GIGETAPPSAQHGIFAASAGSLHGPPGISDNPGHLLFPGLHDQSV---SHTSPGGHVVNSQMH-- 165

  Fly   130 FLSAASDLY-----YAAAAAAAAAASTPTAVPGFGMDP---------FTMGL------------- 167
             |....|::     |...|       :|...| :|..|         ..||:             
Zfish   166 -LGLRGDIFGRPDPYRPVA-------SPRTEP-YGAAPLHNYNHPINMNMGMNVPTHHGPGAFFR 221

  Fly   168 -----MEQEYARVMAEDAQLKALNSRKQRPKKF-------------------------------- 195
                 ::||.:....::.|:       .||||.                                
Zfish   222 YMRQPIKQELSCKWIDENQM-------NRPKKTCDRTFSTMHEMVTHVSMEHVGGPEQSNHVCYW 279

  Fly   196 -KCPNCDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPC--SA 257
             .||....:|....:|..|||:||||:||.|....|||.|.|:|.|..|||.|||.:|:.|  ..
Zfish   280 EDCPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFDG 344

  Fly   258 CGKKFGRRDHLKKHMKTH 275
            |.::|......||||..|
Zfish   345 CDRRFANSSDRKKHMHVH 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 30/100 (30%)
C2H2 Zn finger 197..217 CDD:275368 7/19 (37%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 7/23 (30%)
C2H2 Zn finger 255..275 CDD:275368 7/21 (33%)
zic3NP_001001950.1 zf_ZIC 225..270 CDD:436441 7/51 (14%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
SFP1 <304..388 CDD:227516 27/59 (46%)
C2H2 Zn finger 310..332 CDD:275368 11/21 (52%)
C2H2 Zn finger 340..362 CDD:275368 7/21 (33%)
C2H2 Zn finger 370..390 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.