DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and Sp6

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001102303.1 Gene:Sp6 / 363672 RGDID:1306768 Length:376 Species:Rattus norvegicus


Alignment Length:363 Identity:91/363 - (25%)
Similarity:125/363 - (34%) Gaps:141/363 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 INLHPPQTYSRLFRPWDTQRQAATSAAPRTVKQEPEAITIKT-----ELASSSFGHDCDGDFSSA 63
            ::|.|.|||           |..||         |||....:     ||.|...|.:.  |||..
  Rat    24 LDLQPLQTY-----------QGHTS---------PEAGDYPSPLQPGELQSLPLGPEV--DFSQG 66

  Fly    64 SSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFS------------------------ 104
            .....:||.  .:|.:        ..:.:||   ||.| ||                        
  Rat    67 YELPGASSR--VTCED--------LESDSPL---APGP-FSKLLQPDMSHHYESWFRPTHPGTED 117

  Fly   105 ------HPQSSPLD---THAAATA--------------------SLAPPNQHAPFLSAASDLYYA 140
                  ||.:|.:|   |..|.|:                    ...||:.|...|..|:...:.
  Rat   118 GSWWDLHPGTSWMDLPHTQGALTSPGHPGALQPALGGYVGDHQLCAPPPHPHPHHLLPAAGGQHL 182

  Fly   141 AAAAAAAAASTPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLKALNSRKQRPKK-----FKCPN- 199
            ......|......|....|:|              .:.||..:...||:..|:.     .:||| 
  Rat   183 LGPPDGAKVLEAAAPESQGLD--------------SSLDAAARPKGSRRSVPRSSGQTVCRCPNC 233

  Fly   200 ---------------------------CDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRN 237
                                       |..|::....||.|:|.|:|:|||.|:...|||.|||:
  Rat   234 LEAERLGAPCGPDGGKKKHLHNCHIPGCGKAYAKTSHLKAHLRWHSGDRPFVCNWLFCGKRFTRS 298

  Fly   238 EELTRHKRIHTGLRPYPCSACGKKFGRRDHLKKHMKTH 275
            :||.||.:.|||.:.:||:.|.:.|.|.|||.||||||
  Rat   299 DELQRHLQTHTGTKKFPCAVCSRVFMRSDHLAKHMKTH 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 31/93 (33%)
C2H2 Zn finger 197..217 CDD:275368 9/47 (19%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 12/21 (57%)
C2H2 Zn finger 255..275 CDD:275368 11/19 (58%)
Sp6NP_001102303.1 SP6_N 1..255 CDD:411693 52/280 (19%)
C2H2 Zn finger 259..278 CDD:275368 6/18 (33%)
COG5048 <261..>336 CDD:227381 37/74 (50%)
C2H2 Zn finger 286..308 CDD:275368 11/21 (52%)
C2H2 Zn finger 316..336 CDD:275368 11/19 (58%)

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