DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and Zic2

DIOPT Version :10

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001101862.2 Gene:Zic2 / 361096 RGDID:1311174 Length:529 Species:Rattus norvegicus


Alignment Length:317 Identity:82/317 - (25%)
Similarity:115/317 - (36%) Gaps:94/317 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SSSFGHDCDGDF-SSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLL------DAAP----HPV 102
            ||:|.....|.: .||:::|::::....:.:..:.:...:..|...|.      |:||    |.:
  Rat    74 SSAFTSQGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFLFRSRGFGDSAPGGGQHGL 138

  Fly   103 FSHPQSSPLDTHAAATAS---LAP--PNQHAPFLS-----------------AASDLY------- 138
            |. |.:..|. ||.:.|.   |.|  |.||.|..|                 ..|:.|       
  Rat   139 FG-PGAGGLH-HAHSDAQGHLLFPGLPEQHGPHASQNVLNGQMRLGLPGEVFGRSEQYRQVASPR 201

  Fly   139 ---YAAA-----------------AAAAAAASTPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLK 183
               |:||                 |||||........||..........::||......:..||.
  Rat   202 TDPYSAAQLHNQYGPMNMNMGMNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLS 266

  Fly   184 ALNSRKQRPKKF----------------------------KCPNCDVAFSNNGQLKGHIRIHTGE 220
              |.:|...|.|                            :||.....|....:|..|||:||||
  Rat   267 --NPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKYKLVNHIRVHTGE 329

  Fly   221 RPFKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPC--SACGKKFGRRDHLKKHMKTH 275
            :||.|....|||.|.|:|.|..|||.|||.:|:.|  ..|.::|......||||..|
  Rat   330 KPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDRRFANSSDRKKHMHVH 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 31/95 (33%)
C2H2 Zn finger 197..217 CDD:275368 7/19 (37%)
C2H2 Zn finger 225..247 CDD:275368 11/21 (52%)
zf-C2H2 253..275 CDD:395048 7/23 (30%)
C2H2 Zn finger 255..275 CDD:275368 7/21 (33%)
Zic2NP_001101862.2 zf_ZIC 249..294 CDD:436441 8/46 (17%)
C2H2 Zn finger 306..326 CDD:275368 7/19 (37%)
SFP1 <328..412 CDD:227516 27/59 (46%)
C2H2 Zn finger 334..356 CDD:275368 11/21 (52%)
C2H2 Zn finger 364..386 CDD:275368 7/21 (33%)
C2H2 Zn finger 394..414 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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