DRSC/TRiP Functional Genomics Resources

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Protein Alignment hkb and CG12236

DIOPT Version :9

Sequence 1:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster


Alignment Length:239 Identity:58/239 - (24%)
Similarity:87/239 - (36%) Gaps:43/239 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PQTYSRLFRPWDTQRQAATSAAPRTVKQEPEAITIKTEL-ASSSFGHDCDG-----DFSSASSSA 67
            |||           .|.||:||.:.|.|......|.||. ....:..|.|.     :.:....:|
  Fly   345 PQT-----------SQDATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTA 398

  Fly    68 SSSSNS-SKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAAT-ASLAPPNQHAPF 130
            |.:..: |....|::...|:.|..||.:         |..|... |:.|:.| |:|.|.:     
  Fly   399 SGTPGAGSGQVMEDSGGGSATTGPSTTV---------SVTQVKS-DSKASGTNAALKPGS----- 448

  Fly   131 LSAASDLYYAAAAAAAAAASTPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLKALNSRKQRPKKF 195
            ::.|......|.|:|..|.|...:|...|:.|.......:....|.|....:.:.:|..| .|:.
  Fly   449 VTVARSSKSGATASAPPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHIASRHSEIQ-GKEH 512

  Fly   196 KCPNCDVAFSNNGQLKGH-IRIHTGERPFKCDVNTCGKTFTRNE 238
            :|..|..:|.....|..| .|.|   |...|..    |.||:.|
  Fly   513 ECFICMKSFKTKWSLSTHNSRFH---REMGCST----KGFTKIE 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hkbNP_524221.1 COG5048 195..>261 CDD:227381 13/45 (29%)
zf-C2H2 195..217 CDD:278523 6/22 (27%)
C2H2 Zn finger 197..217 CDD:275368 6/20 (30%)
zf-H2C2_2 210..236 CDD:290200 8/26 (31%)
C2H2 Zn finger 225..247 CDD:275368 5/14 (36%)
zf-H2C2_2 239..264 CDD:290200 58/239 (24%)
C2H2 Zn finger 255..275 CDD:275368
CG12236NP_727050.1 BTB 22..116 CDD:279045
BTB 33..116 CDD:197585
Herpes_capsid <376..467 CDD:283714 22/105 (21%)
C2H2 Zn finger 483..512 CDD:275371 5/29 (17%)
C2H2 Zn finger 514..535 CDD:275371 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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