DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and LUG1

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_013456.1 Gene:LUG1 / 851066 SGDID:S000004344 Length:807 Species:Saccharomyces cerevisiae


Alignment Length:246 Identity:61/246 - (24%)
Similarity:104/246 - (42%) Gaps:35/246 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 IQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLL----SHCRQLKKISLENI--ELDDDICAE 370
            |:...|...|.:...|...::..:.::|..:||..|    ::.|:.  ::.|||  :|||:|...
Yeast   101 IEVADFQELTSIGLGRSSEMNKMIKNLTNETLLEFLMLTKANLREF--LACENIQDDLDDNIIKY 163

  Fly   371 I-AKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALVTHISPNLIRLNI 434
            | :..:.|..|:....||.|      ..||.  :.:|:..:.:.|.|.........:..:..|.:
Yeast   164 ILSPGKVLSVVDFCGCSGTT------FTESF--IKALDKYYPNKSIDQYRLEPIQQNYQITCLGL 220

  Fly   435 AGCRRVLFDSHVA-TLQKRCPQLLELDLSDCNSLTPTVITAIMKFKMLEYLSVSRCYLIPATKFI 498
            ..|  :...|||. .:.|..|:|.:||||..:....|:...|..:|.|.:||::.|..:.....:
Yeast   221 NDC--IDLPSHVLWKILKMLPELQKLDLSHTSIDDSTLYHGIPHWKNLTHLSLATCLQVTPRAVL 283

  Fly   499 ELKS-MPSLTYLDIFGML----------SDTAMEV----LEKQLPKMGINK 534
            |..| .|::|..|....|          |.:..||    |.|:|.:.|.||
Yeast   284 EFFSHHPTITDPDNTSTLEWLNVSVIAHSSSWNEVHTMFLLKKLCQHGHNK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920
leucine-rich repeat 302..327 CDD:275381 3/14 (21%)
AMN1 309..480 CDD:187754 41/175 (23%)
leucine-rich repeat 328..352 CDD:275381 4/27 (15%)
leucine-rich repeat 353..376 CDD:275381 8/25 (32%)
leucine-rich repeat 377..402 CDD:275381 7/24 (29%)
leucine-rich repeat 403..428 CDD:275381 3/24 (13%)
leucine-rich repeat 429..455 CDD:275381 6/26 (23%)
leucine-rich repeat 456..480 CDD:275381 7/23 (30%)
leucine-rich repeat 481..500 CDD:275381 4/18 (22%)
leucine-rich repeat 506..529 CDD:275381 9/36 (25%)
LUG1NP_013456.1 leucine-rich repeat 171..198 CDD:275381 8/34 (24%)
leucine-rich repeat 215..240 CDD:275381 6/26 (23%)
leucine-rich repeat 241..265 CDD:275381 7/23 (30%)
leucine-rich repeat 266..300 CDD:275381 9/33 (27%)
leucine-rich repeat 301..333 CDD:275381 8/31 (26%)
leucine-rich repeat 336..379 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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