DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and AT5G67140

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_201515.1 Gene:AT5G67140 / 836849 AraportID:AT5G67140 Length:228 Species:Arabidopsis thaliana


Alignment Length:229 Identity:56/229 - (24%)
Similarity:85/229 - (37%) Gaps:68/229 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 ERLSDEILLDIFKWLPKKTLLRMAT-VCRRFNRC-----SRDETL----W-------TRL----- 282
            :||..::|..||......|:|..|: ||:::.:.     :|.|||    |       :||     
plant     8 DRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDSTSRLVHLAF 72

  Fly   283 ---DLGLRTIRPGALEQIVRRGVLVIRLAQ-------------TSIQEPAFAPYTEVFRT-RLQY 330
               :|.:...|.|.  .|...|:..|..|:             |:|.:......  :.|| .||:
plant    73 NLKELDISRSRWGC--HITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQL--ISRTSSLQH 133

  Fly   331 LDLSMASITRSSLLTLLSHCRQLKKISLENIELDDDICAEIAKNEALEAVNLTMASGLTSNSVRL 395
            |::....||..||..:...|.|||.|.:.       .|..:.:...|..||              
plant   134 LNIGGTFITDESLFAIAERCHQLKTIGMW-------CCRHVTERGLLVLVN-------------- 177

  Fly   396 MMESLTSLSSLNISWTDLSADAVTALVTHISPNL 429
               ....|.|:|:..|.:..|...||:| |||.|
plant   178 ---KCRKLESINLWGTRVPVDCFIALLT-ISPAL 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 15/57 (26%)
leucine-rich repeat 302..327 CDD:275381 6/38 (16%)
AMN1 309..480 CDD:187754 32/135 (24%)
leucine-rich repeat 328..352 CDD:275381 8/23 (35%)
leucine-rich repeat 353..376 CDD:275381 4/22 (18%)
leucine-rich repeat 377..402 CDD:275381 3/24 (13%)
leucine-rich repeat 403..428 CDD:275381 10/24 (42%)
leucine-rich repeat 429..455 CDD:275381 1/1 (100%)
leucine-rich repeat 456..480 CDD:275381
leucine-rich repeat 481..500 CDD:275381
leucine-rich repeat 506..529 CDD:275381
AT5G67140NP_201515.1 F-box-like 7..>43 CDD:463757 10/34 (29%)
leucine-rich repeat 50..72 CDD:275381 6/21 (29%)
AMN1 <58..182 CDD:187754 29/151 (19%)
leucine-rich repeat 74..104 CDD:275381 7/31 (23%)
leucine-rich repeat 105..130 CDD:275381 4/26 (15%)
leucine-rich repeat 131..155 CDD:275381 8/23 (35%)
leucine-rich repeat 156..181 CDD:275381 7/48 (15%)
leucine-rich repeat 182..206 CDD:275381 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

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