DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and AT4G05497

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_849530.1 Gene:AT4G05497 / 830176 AraportID:AT4G05497 Length:246 Species:Arabidopsis thaliana


Alignment Length:260 Identity:54/260 - (20%)
Similarity:110/260 - (42%) Gaps:27/260 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 TPAMSAHINSGINYFERLSDEILLDIFKWLPKKTLLRMA-TVCRRFNRCSRDETLWTRLDLGLRT 288
            :|...|..|.....:..|..|:...|...|....:|:.| .||:.:.|..:|.::|.::|:.:: 
plant     7 SPFPQAMKNGEYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIK- 70

  Fly   289 IRPGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLL----SH 349
                  |.:|....|..      :.||......::.:..|  |::::..:..:|.|..:    |:
plant    71 ------ENLVNSVELFY------VIEPLCCRAVDLSQGGL--LEINIDYLVNTSFLNYIADRSSN 121

  Fly   350 CRQLKKISLENIELDDDICAEIAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWT-DL 413
            .|:|..:....: |...:.....|...||.:::|..|.:....::::.:|..:|.:|.::.| |:
plant   122 LRRLGVVDCAPV-LSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDV 185

  Fly   414 S-ADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMK 477
            . .|.|...:....|.|..|.:  .|..|.::.:..:.:.||.|..|.|..|  |...::..|:|
plant   186 KCCDKVALAIAETMPGLRHLQL--FRNGLSETGLNAILEGCPHLKNLGLHQC--LNINIVGDIVK 246

  Fly   478  477
            plant   247  246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 11/42 (26%)
leucine-rich repeat 302..327 CDD:275381 3/24 (13%)
AMN1 309..480 CDD:187754 36/175 (21%)
leucine-rich repeat 328..352 CDD:275381 5/27 (19%)
leucine-rich repeat 353..376 CDD:275381 3/22 (14%)
leucine-rich repeat 377..402 CDD:275381 5/24 (21%)
leucine-rich repeat 403..428 CDD:275381 6/26 (23%)
leucine-rich repeat 429..455 CDD:275381 5/25 (20%)
leucine-rich repeat 456..480 CDD:275381 7/22 (32%)
leucine-rich repeat 481..500 CDD:275381
leucine-rich repeat 506..529 CDD:275381
AT4G05497NP_849530.1 F-box_AtSKIP19-like 20..66 CDD:438935 11/45 (24%)
leucine-rich repeat 98..121 CDD:275381 4/24 (17%)
AMN1 <106..246 CDD:187754 31/144 (22%)
leucine-rich repeat 122..147 CDD:275381 4/25 (16%)
leucine-rich repeat 148..173 CDD:275381 5/24 (21%)
leucine-rich repeat 174..201 CDD:275381 6/26 (23%)
leucine-rich repeat 202..226 CDD:275381 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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