DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and AT2G36370

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_565845.3 Gene:AT2G36370 / 818210 AraportID:AT2G36370 Length:940 Species:Arabidopsis thaliana


Alignment Length:558 Identity:119/558 - (21%)
Similarity:201/558 - (36%) Gaps:148/558 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HYE---HPSSPSALTFEALEEMGIG---MLDSE------ESSSSALSAIALAVSATSDDNSNETT 95
            |.|   |.:.| .|:||:::|:.|.   .||.:      ..|..:|..:..|....         
plant   356 HQEQISHRTLP-ILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLN--------- 410

  Fly    96 PCASVSRMAHQLQHTQRLSLGSTGDITLD-SPAVEDSLSMSRQSAEKLQILAQAKRSSLGSEGSG 159
              ..||.:...|.:.:.|   :..|:|:| ||.:....|:. .|.:...:|:...|.:|    .|
plant   411 --IKVSTLLELLLNFREL---TEVDLTVDVSPIIPVQASVF-YSGQGHCLLSSITRLTL----EG 465

  Fly   160 NSNSPSKRLR--NPLAAVTCNNQIDGTASLNFQPSTSRLAQVRQAKKPSTTNITTRIVAADSFFV 222
            .|:.....||  :.:....|...|.|.|.|    |.:.:|.|.|..|    .:.:.||...||..
plant   466 RSDICDMELRSISRVCESLCYLNIKGCALL----SDACIASVIQRCK----KLCSLIVCYTSFSE 522

  Fly   223 FRTPAMSA---------HINS--------GINYFERLSDEILLDIFKWLPKKTLLRMATVCRRFN 270
            ....|:.|         .|||        .::..|.:|:..||::.....|     |.::|.|..
plant   523 NSILALCATISMTNEHMDINSVASNLQTLHMSKCEGISETSLLNLITHSQK-----MKSLCLRDT 582

  Fly   271 R------CSRDETLWTRLDLGLRTIRPGALEQIVRRG----VLVIRLAQTSIQ------EPAFAP 319
            :      |....:....||:...||...||.:::.|.    .|..|..:..:|      ...|:|
plant   583 KVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCKNLLQLEVDGRTDNFSP 647

  Fly   320 YT---EVFR-----TRLQYLDLSM-------------------------ASITRSSLLTLLSHCR 351
            ..   |||:     :.|:.|::..                         ||:....|..|.|.|.
plant   648 LVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVISVGLGASLGEDVLKLLPSTCP 712

  Fly   352 QLKKISLENIELDDDICAEIAKN-EALEAVNLTMASG-LTSNSVRLMMESLTSLSSLNIS-WTDL 413
            .|:.|.|...|:.|.....:..: :.|:.:.|:...| ::..|.:..|.:|..|....:: |  :
plant   713 LLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEISLQSFKFSMPNLRKLRLERVTRW--M 775

  Fly   414 SADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPT-------- 470
            :.|.:..| |...|||..|::.||..:..|.. ..:....|.::.|.|.:|.|:|..        
plant   776 TNDDLLVL-TQSCPNLTELSLVGCLHLTSDCQ-PIISAGWPGMISLHLEECGSITENGVASLYGC 838

  Fly   471 -------------------VITAIMKFKMLEYLSVSRC 489
                               ::.|.:||.||..:|:..|
plant   839 IALEDLFLRHNGSGIQKSFLLDATLKFPMLRLVSLDMC 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 9/47 (19%)
leucine-rich repeat 302..327 CDD:275381 8/38 (21%)
AMN1 309..480 CDD:187754 46/239 (19%)
leucine-rich repeat 328..352 CDD:275381 8/48 (17%)
leucine-rich repeat 353..376 CDD:275381 5/23 (22%)
leucine-rich repeat 377..402 CDD:275381 6/25 (24%)
leucine-rich repeat 403..428 CDD:275381 5/25 (20%)
leucine-rich repeat 429..455 CDD:275381 5/25 (20%)
leucine-rich repeat 456..480 CDD:275381 8/50 (16%)
leucine-rich repeat 481..500 CDD:275381 3/9 (33%)
leucine-rich repeat 506..529 CDD:275381
AT2G36370NP_565845.3 PHA03098 42..>252 CDD:222983
BACK 155..258 CDD:197943
leucine-rich repeat 373..399 CDD:275381 5/25 (20%)
leucine-rich repeat 400..425 CDD:275381 5/35 (14%)
leucine-rich repeat 426..457 CDD:275381 9/34 (26%)
AMN1 435..653 CDD:187754 51/235 (22%)
leucine-rich repeat 458..483 CDD:275381 6/28 (21%)
leucine-rich repeat 484..509 CDD:275381 10/32 (31%)
leucine-rich repeat 510..547 CDD:275381 9/36 (25%)
leucine-rich repeat 548..573 CDD:275381 4/24 (17%)
leucine-rich repeat 597..621 CDD:275381 7/23 (30%)
leucine-rich repeat 633..663 CDD:275381 6/29 (21%)
leucine-rich repeat 664..684 CDD:275381 2/19 (11%)
leucine-rich repeat 688..713 CDD:275381 6/24 (25%)
leucine-rich repeat 714..738 CDD:275381 5/23 (22%)
leucine-rich repeat 739..762 CDD:275381 5/22 (23%)
leucine-rich repeat 763..789 CDD:275381 6/28 (21%)
leucine-rich repeat 790..815 CDD:275381 5/25 (20%)
leucine-rich repeat 816..835 CDD:275381 5/18 (28%)
leucine-rich repeat 841..867 CDD:275381 3/25 (12%)
Blue background indicates that the domain is not in the aligned region.

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