DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and Fbxl18

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001385803.1 Gene:Fbxl18 / 678726 RGDID:1596958 Length:707 Species:Rattus norvegicus


Alignment Length:387 Identity:79/387 - (20%)
Similarity:134/387 - (34%) Gaps:110/387 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 SGINYFERLSDEILLDIFKWLPKKTL-LRMATVCRRFNRCSRDETLWTRL--------------- 282
            :|..:....||||||.|...:|...| |.:...||:......|::|...:               
  Rat    12 AGDTHLLGFSDEILLHILSHVPSTDLVLNVRRTCRKLAALCLDKSLVHTVLLQKDYQASEEKVKQ 76

  Fly   283 ---DLGLRTIR----------PGA-LEQIVRRGVLV-----------IRLAQ--TSIQEPAFAPY 320
               ::| |.|:          ||: :|.:.|...||           :||::  :.:|       
  Rat    77 LVKEIG-REIQQLNMAGCYWLPGSTIEHVARCHSLVKVNLSGCHLTSLRLSRVLSCLQ------- 133

  Fly   321 TEVFRTRLQYLDLSM---ASITRSSLLTLLSHCRQLKKISLENIELDDDICAEIAKNEA-LEAVN 381
                |.|...:|:|.   ||...|.....||..::||:............||.:.|... .|.::
  Rat   134 ----RLRSLAIDVSPGFDASQLSSECKATLSRVQELKQTLFTPSYGVVPCCASLQKLLLYFEILD 194

  Fly   382 LTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALVTHISPNLIRLNIA----------- 435
            .|....:.|..:.:...::....:|.:.:..|:..       :|:..::||.:|           
  Rat   195 RTREGAVLSGQLMVGQSNVPHYQNLRVFYARLAPG-------YINQEVVRLYLAVLSDRTPENLH 252

  Fly   436 -------------GCRRVLFDS---HVATLQKRCPQLLELDLSDCNSLTPTVITAIMKFKMLEYL 484
                         |..:.|.||   :||.      ..|:|..|..|..|   :...|||....|.
  Rat   253 AFLISVPGSFAESGATKNLLDSMARNVAL------DALQLPKSWLNGST---LLQHMKFNNPFYF 308

  Fly   485 SVSRCYLIPATKFIEL----KSMPSLTYLDIFG----MLSDTAMEVLEKQLPKMGINKFIHS 538
            |.|||.|........|    |.:.||..|::.|    :.:|:.:...|..:....:...:.|
  Rat   309 SFSRCTLSGGHLIQRLINGGKDLRSLASLNLSGCVHCLSADSLLRKAEDDIDSSILETLVES 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 14/42 (33%)
leucine-rich repeat 302..327 CDD:275381 6/37 (16%)
AMN1 309..480 CDD:187754 38/203 (19%)
leucine-rich repeat 328..352 CDD:275381 7/26 (27%)
leucine-rich repeat 353..376 CDD:275381 5/22 (23%)
leucine-rich repeat 377..402 CDD:275381 3/24 (13%)
leucine-rich repeat 403..428 CDD:275381 3/24 (13%)
leucine-rich repeat 429..455 CDD:275381 9/52 (17%)
leucine-rich repeat 456..480 CDD:275381 8/23 (35%)
leucine-rich repeat 481..500 CDD:275381 6/18 (33%)
leucine-rich repeat 506..529 CDD:275381 5/26 (19%)
Fbxl18NP_001385803.1 F-box_FBXL18 17..60 CDD:438900 14/42 (33%)
FBXL18_LRR 74..664 CDD:466163 64/325 (20%)
leucine-rich repeat 334..373 CDD:275381 6/37 (16%)
leucine-rich repeat 374..403 CDD:275381
leucine-rich repeat 404..473 CDD:275381
leucine-rich repeat 522..548 CDD:275381
leucine-rich repeat 549..578 CDD:275381
leucine-rich repeat 579..604 CDD:275381
leucine-rich repeat 605..629 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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