DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and Fbxl20

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_063125868.1 Gene:Fbxl20 / 64039 RGDID:621722 Length:468 Species:Rattus norvegicus


Alignment Length:424 Identity:93/424 - (21%)
Similarity:159/424 - (37%) Gaps:136/424 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 NSGINYF----------ERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDL--G 285
            ||.::|.          ::|..|:||.||.:|...||.|.|.|.|.:|..:.|.:.|.|:||  .
  Rat    26 NSPLSYMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDF 90

  Fly   286 LRTIRPGALEQIVRR-GVLVIRLAQTSIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSH 349
            .|.|....:|.|.:| |..:.:|:..                       ....:..::|.|...:
  Rat    91 QRDIEGRVVENISKRCGGFLRKLSLR-----------------------GCLGVGDNALRTFAQN 132

  Fly   350 CRQLKKISLEN-IELDDDICAEIAK-NEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWTD 412
            ||.::.:||.. .:..|..|..::| ...|..::|...:.:|:.|::.:.|....|..|||||.|
  Rat   133 CRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD 197

  Fly   413 -LSADAVTALV--------------THIS-----------PNLIRLNI----------------- 434
             ::.|.:.|||              |.:.           |.|:.||:                 
  Rat   198 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG 262

  Fly   435 ---------AGCRRV-------------------------LFDSHVATLQKRCPQLLELDLSDCN 465
                     :||..:                         |.|....||.:.|.:|.::||.:|.
  Rat   263 CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECV 327

  Fly   466 SLT-PTVITAIMKFKMLEYLSVSRCYLI---------------PATKFIELKSMPSLTYLDIFGM 514
            .:| .|:|...:....|:.||:|.|.||               ...:.|||.:.|.:|...:..:
  Rat   328 QITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHL 392

  Fly   515 LSDTAMEVLE----KQLPKMGINKF-IHSSVSRP 543
            .|..::|.:|    :|:.:.||.:. :.|:..:|
  Rat   393 KSCHSLERIELYDCQQITRAGIKRLRVKSTALQP 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 16/51 (31%)
leucine-rich repeat 302..327 CDD:275381 1/24 (4%)
AMN1 309..480 CDD:187754 44/250 (18%)
leucine-rich repeat 328..352 CDD:275381 3/23 (13%)
leucine-rich repeat 353..376 CDD:275381 5/24 (21%)
leucine-rich repeat 377..402 CDD:275381 5/24 (21%)
leucine-rich repeat 403..428 CDD:275381 12/50 (24%)
leucine-rich repeat 429..455 CDD:275381 10/76 (13%)
leucine-rich repeat 456..480 CDD:275381 7/24 (29%)
leucine-rich repeat 481..500 CDD:275381 8/33 (24%)
leucine-rich repeat 506..529 CDD:275381 5/26 (19%)
Fbxl20XP_063125868.1 None

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