DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and skp2

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_068072015.2 Gene:skp2 / 563708 ZFINID:ZDB-GENE-030219-158 Length:510 Species:Danio rerio


Alignment Length:399 Identity:122/399 - (30%)
Similarity:206/399 - (51%) Gaps:30/399 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 SLNFQPSTSRLAQVRQAKKPS------TTNITTRIVAADS-------------------FFVFRT 225
            |.|.:.|..|..:.:..|:||      |.|....::...|                   |.:.|.
Zfish   111 SENLEGSLCRSQRTKWKKRPSCSSGLDTENTPNELIQQWSPPHKKALTTAKGKENEENLFVLARR 175

  Fly   226 PAMSAHINSGINYFERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIR 290
            |......::.: .::.|.||:||.||..|..:.|||.:.||:|::|.:.||:||..:||..:...
Zfish   176 PRKRRESSANL-CWDSLPDELLLGIFSRLSLQDLLRTSRVCKRWHRLAFDESLWHSVDLVGKAQL 239

  Fly   291 PGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKK 355
            ...|.|::..|||.:|...|.|.:|:|.....:   |:|:||.|..::..|.|..:||.|:.|:.
Zfish   240 DAELGQVLSAGVLRLRCPHTCIGQPSFKSTPSL---RVQHLDFSNCTVETSVLEDVLSRCKHLQN 301

  Fly   356 ISLENIELDDDICAEIAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTA 420
            :|||.:.|.|:|...:|:|..:..:||...||.:..|:..|:.:.|.:..:|:||.|.|...:.|
Zfish   302 LSLEGLVLSDNIIYSLAQNPEIIRLNLCGCSGFSPESLTEMLTACTRIEEMNVSWCDFSNLHIQA 366

  Fly   421 LVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMKFKMLEYLS 485
            :.::|..::.:|||:|.|:.|....|..:.||||.:.:|||||...:|......:.:...|.:|.
Zfish   367 IASNIPSSVSQLNISGYRQNLTMEDVKAIVKRCPNITDLDLSDSVLVTTDSFPVLQQLSSLRHLG 431

  Fly   486 VSRCYLIPATKFIELKSMPSLTYLDIFGMLSDTAMEVLEKQLPKMGINKFIHSSVSRPTVGTRR- 549
            :||||.|.....|:.:...:|..|::||::.|:.:.:|.|.||.:.||....|:|:|||..:|: 
Zfish   432 LSRCYQIHPASLIDFEKFLNLQTLEVFGLIQDSYLPILCKSLPHIQINTQPFSTVARPTSSSRKD 496

  Fly   550 TSIWGLRTR 558
            .::||:..|
Zfish   497 RTLWGMHCR 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 19/41 (46%)
leucine-rich repeat 302..327 CDD:275381 7/24 (29%)
AMN1 309..480 CDD:187754 54/170 (32%)
leucine-rich repeat 328..352 CDD:275381 9/23 (39%)
leucine-rich repeat 353..376 CDD:275381 9/22 (41%)
leucine-rich repeat 377..402 CDD:275381 6/24 (25%)
leucine-rich repeat 403..428 CDD:275381 7/24 (29%)
leucine-rich repeat 429..455 CDD:275381 10/25 (40%)
leucine-rich repeat 456..480 CDD:275381 6/23 (26%)
leucine-rich repeat 481..500 CDD:275381 8/18 (44%)
leucine-rich repeat 506..529 CDD:275381 8/22 (36%)
skp2XP_068072015.2 None

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