DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and fbxl5

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_012816107.1 Gene:fbxl5 / 496483 XenbaseID:XB-GENE-968565 Length:662 Species:Xenopus tropicalis


Alignment Length:464 Identity:83/464 - (17%)
Similarity:144/464 - (31%) Gaps:186/464 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 LSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLW------------------TRLD----- 283
            |..|::|:||.:|..:.|.|.:.|..::.:.:|..:||                  |.||     
 Frog   208 LPPEVMLNIFSYLNPQDLCRCSQVNTKWAQLARTGSLWRHLYPVLWARGDWYSGPPTHLDNEPDE 272

  Fly   284 --LGLRTIRPGALEQ---------------------------------------IVRRGVLVIRL 307
              :..|.....|.::                                       .:...|..:.|
 Frog   273 DWISRRKDESRAYQEWDEDADIDESEETGEDDPSISVAQREKELLNSLVHYILPYIGHSVKTLVL 337

  Fly   308 AQTSIQEPAFAPYTEVFRTRLQY------LDLSMASITRSSLL-TLLSHCRQLKKISLENIELDD 365
            |.:|      |...:|.|..|:|      |||:...|:.|:.. .....|:.|:.|.|..     
 Frog   338 AYSS------ATSNKVIRQILEYCPNMEHLDLTQTDISDSAFNGWCFGACQTLRHIDLSG----- 391

  Fly   366 DICAEIAKNEALEAVNLTMASGL--------------TSNSVRLMME--SLTSLSSLNISWTDLS 414
              |.:|. :.|||.:::.:...|              |...:|..|.  ||..::..:..::|.|
 Frog   392 --CEKIT-DSALEKLSVALGMPLAHKKRLLKCYRNNRTVKDIRNQMRCGSLAQITGESGIYSDYS 453

  Fly   415 ADAVTAL-----------------------VTHISPNLIRLNIAGCRR--------VLFDSH--- 445
            :..:..|                       |..::|||...:...|.|        |:...|   
 Frog   454 SSQIWILNSGNLGDIEDAADWKFRTTDGLGVLEMTPNLTCFSNGCCSRAVPGRWTNVIRQEHCKA 518

  Fly   446 ---------------------------VATLQKR----CPQLLELDLSDCNSLTPTVITAIMKFK 479
                                       ..|||..    ||...:||....              :
 Frog   519 APLNYCGHTLCGNTLRTIQALPGSNIGTKTLQSEIRDICPGSAKLDQQVA--------------R 569

  Fly   480 MLEYLSVSRCYLIPATKFIELK---SMPSLTYLDIFGMLSDT--AMEVLEKQLPKMGINKFIH-S 538
            :|::||:|.|:.|.......|.   .:|:|.:|::.|.|:.|  .::.|....|.:....|.: .
 Frog   570 VLQFLSLSGCHQITDHGLRVLTIGGGLPNLEHLNLSGCLNVTGSGLQDLVSACPSLNDEHFYYCD 634

  Fly   539 SVSRPTVGT 547
            ::|.|...|
 Frog   635 NISGPHAAT 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 12/56 (21%)
leucine-rich repeat 302..327 CDD:275381 7/24 (29%)
AMN1 309..480 CDD:187754 44/258 (17%)
leucine-rich repeat 328..352 CDD:275381 8/30 (27%)
leucine-rich repeat 353..376 CDD:275381 5/22 (23%)
leucine-rich repeat 377..402 CDD:275381 8/40 (20%)
leucine-rich repeat 403..428 CDD:275381 4/47 (9%)
leucine-rich repeat 429..455 CDD:275381 9/67 (13%)
leucine-rich repeat 456..480 CDD:275381 2/23 (9%)
leucine-rich repeat 481..500 CDD:275381 6/18 (33%)
leucine-rich repeat 506..529 CDD:275381 6/24 (25%)
fbxl5XP_012816107.1 Hr_FBXL5 7..160 CDD:213984
F-box_FBXL5 205..245 CDD:438890 10/36 (28%)
leucine-rich repeat 332..357 CDD:275381 9/30 (30%)
AMN1 <340..444 CDD:187754 26/117 (22%)
leucine-rich repeat 358..383 CDD:275381 6/24 (25%)
leucine-rich repeat 384..438 CDD:275381 12/61 (20%)
leucine-rich repeat 439..500 CDD:275381 8/60 (13%)
leucine-rich repeat 511..559 CDD:275381 5/47 (11%)
AMN1 556..>625 CDD:187754 19/82 (23%)
leucine-rich repeat 571..598 CDD:275381 7/26 (27%)
leucine-rich repeat 599..624 CDD:275381 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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