Sequence 1: | NP_730815.2 | Gene: | Skp2 / 40548 | FlyBaseID: | FBgn0037236 | Length: | 559 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001005563.1 | Gene: | Fbxl6 / 362941 | RGDID: | 1359687 | Length: | 535 | Species: | Rattus norvegicus |
Alignment Length: | 358 | Identity: | 74/358 - (20%) |
---|---|---|---|
Similarity: | 122/358 - (34%) | Gaps: | 95/358 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 226 PAMSAHINSGINYFERLSDEILLDIFKWL-----PKKTLLRMATVCRRFNRCSRDETLWTRLDLG 285
Fly 286 ---------------------LRTIRPGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRLQ 329
Fly 330 YLDLS-MASITRSSLLTLLSHCRQLKKISLENIELDDD--------------------------I 367
Fly 368 CAEIAKNEALEAVNLTMASGLTSNSVRLMM---------ESLTSLSSLNISWTDLSADAVTALVT 423
Fly 424 HISPNLIRLNIAGCRRVLFDSHVATLQKRC-PQLLELDLSDCNSLTPTVITAIMKFKMLEYLSVS 487
Fly 488 RCYLIPATKFIELKSMPSLTYLDIFGMLSDTAM 520 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Skp2 | NP_730815.2 | F-box-like | 239..284 | CDD:289689 | 15/49 (31%) |
leucine-rich repeat | 302..327 | CDD:275381 | 3/24 (13%) | ||
AMN1 | 309..480 | CDD:187754 | 41/207 (20%) | ||
leucine-rich repeat | 328..352 | CDD:275381 | 8/24 (33%) | ||
leucine-rich repeat | 353..376 | CDD:275381 | 4/48 (8%) | ||
leucine-rich repeat | 377..402 | CDD:275381 | 5/33 (15%) | ||
leucine-rich repeat | 403..428 | CDD:275381 | 4/24 (17%) | ||
leucine-rich repeat | 429..455 | CDD:275381 | 6/26 (23%) | ||
leucine-rich repeat | 456..480 | CDD:275381 | 8/23 (35%) | ||
leucine-rich repeat | 481..500 | CDD:275381 | 3/18 (17%) | ||
leucine-rich repeat | 506..529 | CDD:275381 | 5/15 (33%) | ||
Fbxl6 | NP_001005563.1 | F-box-like | 105..155 | CDD:289689 | 15/49 (31%) |
AMN1 | 171..390 | CDD:187754 | 43/224 (19%) | ||
leucine-rich repeat | 188..213 | CDD:275381 | 4/29 (14%) | ||
leucine-rich repeat | 214..239 | CDD:275381 | 8/24 (33%) | ||
leucine-rich repeat | 240..291 | CDD:275381 | 4/50 (8%) | ||
leucine-rich repeat | 292..321 | CDD:275381 | 4/28 (14%) | ||
leucine-rich repeat | 322..349 | CDD:275381 | 5/27 (19%) | ||
AMN1 | <349..500 | CDD:187754 | 24/94 (26%) | ||
leucine-rich repeat | 350..377 | CDD:275381 | 6/26 (23%) | ||
leucine-rich repeat | 378..401 | CDD:275381 | 11/39 (28%) | ||
leucine-rich repeat | 434..466 | CDD:275381 | |||
leucine-rich repeat | 467..491 | CDD:275381 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166346581 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR16134 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.030 |