DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and fbxl6

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001296447.1 Gene:fbxl6 / 323163 ZFINID:ZDB-GENE-060810-162 Length:564 Species:Danio rerio


Alignment Length:508 Identity:101/508 - (19%)
Similarity:176/508 - (34%) Gaps:155/508 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SAIALAVSA---TSDDNSNETTPCASVSRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQS 138
            |.:|.|.||   .:..:..||:|.....|.|                 .|...|  |||...:..
Zfish     3 STVAQASSAEMSAAQSSRAETSPTKPAKRKA-----------------PLKRKA--DSLKDDKSK 48

  Fly   139 AEKLQILAQAKRSS------------LGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQP 191
            .:|.:.:.:..|.:            :.:..||:|....||............:..|:.|     
Zfish    49 KKKRKPVKRTVRPNYTVQEGEDMLLIISNISSGDSVWKPKRKVGKKKKTNKKAKTKGSTS----- 108

  Fly   192 STSRLAQVRQAKKPSTTNI-TTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDIFKW-- 253
                    ::.|.|..|.: ..|....|...|..    ||..:...::.:.|..|||:.||::  
Zfish   109 --------KKEKAPVKTEVLKVREETDDKHDVMD----SAKTDRFDHWGQSLPLEILVKIFQFAV 161

  Fly   254 -----LPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRRGVLVIRLAQTSIQ 313
                 :|  .|.|:..|||.:|..:....||..:.:|...|.||..:                  
Zfish   162 FQDGAVP--LLCRVGRVCRLWNGAASSPILWRSVSIGYCWIEPGKSQ------------------ 206

  Fly   314 EPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISL----ENIELDDDICAEIAKN 374
                .|.||      |.:..::..:..:.|.       ||::.||    :|:   |.:..:::::
Zfish   207 ----LPGTE------QKIKNTVDWLAENRLF-------QLREFSLCHWKKNV---DYVIQKVSQS 251

  Fly   375 -EALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALV------------THI- 425
             .:|.::.|:..:|:|..:.:.:.....||..:|:..::::.|.:.:.:            ||. 
Zfish   252 CLSLHSLKLSYCTGMTEKAFQNLGADCQSLEDINVQHSEINVDGLVSFLEAYGNQIKKIYFTHST 316

  Fly   426 -SPNLIRLNIAGCRRVLFDSHVAT---------------LQKRCPQLLELDLSDCNSLTPTVITA 474
             |..|:.....||...|....:.|               ||..||:|....|.:..:: |.:|..
Zfish   317 KSDKLLSALSKGCCPELRLLEINTKLDGGYSQLPICIQGLQIGCPKLQTFRLMNVTAV-PKMIRN 380

  Fly   475 IMK----FKMLEYLSVSRCYLIPATKFIE----------LKSMPSLTYLDIFG 513
            |..    |.|||.|.:       ||.|..          |...|:|..||:.|
Zfish   381 IPSSTCGFPMLEELCI-------ATSFHSFMTDNDLNNVLHGSPNLRVLDLRG 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 15/48 (31%)
leucine-rich repeat 302..327 CDD:275381 3/24 (13%)
AMN1 309..480 CDD:187754 37/208 (18%)
leucine-rich repeat 328..352 CDD:275381 2/23 (9%)
leucine-rich repeat 353..376 CDD:275381 5/27 (19%)
leucine-rich repeat 377..402 CDD:275381 4/24 (17%)
leucine-rich repeat 403..428 CDD:275381 6/38 (16%)
leucine-rich repeat 429..455 CDD:275381 8/40 (20%)
leucine-rich repeat 456..480 CDD:275381 6/27 (22%)
leucine-rich repeat 481..500 CDD:275381 6/28 (21%)
leucine-rich repeat 506..529 CDD:275381 4/8 (50%)
fbxl6NP_001296447.1 F-box_FBXL6 145..191 CDD:438891 14/47 (30%)
AMN1 213..396 CDD:187754 37/193 (19%)
leucine-rich repeat 229..254 CDD:275381 5/27 (19%)
leucine-rich repeat 255..280 CDD:275381 4/24 (17%)
leucine-rich repeat 281..306 CDD:275381 3/24 (13%)
leucine-rich repeat 307..334 CDD:275381 6/26 (23%)
leucine-rich repeat 335..362 CDD:275381 4/26 (15%)
AMN1 <391..>542 CDD:187754 12/43 (28%)
leucine-rich repeat 391..418 CDD:275381 7/33 (21%)
leucine-rich repeat 419..438 CDD:275381 4/8 (50%)
leucine-rich repeat 445..473 CDD:275381
leucine-rich repeat 475..505 CDD:275381
leucine-rich repeat 506..530 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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