DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and Fbxl15

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001101073.1 Gene:Fbxl15 / 309453 RGDID:1306444 Length:300 Species:Rattus norvegicus


Alignment Length:260 Identity:68/260 - (26%)
Similarity:107/260 - (41%) Gaps:43/260 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 DEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQI---VRRGVLV- 304
            |.:|..:..|:|.:.|||:..|.|.|.         ..:.|.|..:|.....|:   :.|..|| 
  Rat    26 DVLLPHVLNWVPLRQLLRLQRVSRAFR---------ALVQLHLARLRRFDAAQVGPQIPRAALVR 81

  Fly   305 -IRLAQTSIQEPAFAPYTE---------VFRTRLQYLDLSMA---SITRSSLLTLLSHCRQLKKI 356
             :|.|: .:||.|.||..|         |.....|...:::|   .::|.:|..|...|.:|::|
  Rat    82 LLRDAE-GLQELALAPCHEWLLDEDLVPVLARNPQLRSVALAGCGQLSRRALGALAEGCPRLQRI 145

  Fly   357 SLENIELDD--------DICAEIAKNEALEAVNLTMASGLTSNS-VRLMMESLTSLSSLNISWTD 412
            ||.:.:..|        |.|      .|||.::||....|...: |.|.......|.||:::...
  Rat   146 SLAHCDWVDGLALRGLADRC------PALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNA 204

  Fly   413 LSADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMK 477
            ...|.....:....|.|..|::.||.||..|. |.||.:.||.|..|.:..|:.:....::.:.|
  Rat   205 NVGDTAVQELARNCPQLEHLDLTGCLRVGSDG-VRTLAEYCPALRSLRVRHCHHVAEPSLSRLRK 268

  Fly   478  477
              Rat   269  268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 10/36 (28%)
leucine-rich repeat 302..327 CDD:275381 11/35 (31%)
AMN1 309..480 CDD:187754 49/190 (26%)
leucine-rich repeat 328..352 CDD:275381 6/26 (23%)
leucine-rich repeat 353..376 CDD:275381 7/30 (23%)
leucine-rich repeat 377..402 CDD:275381 7/25 (28%)
leucine-rich repeat 403..428 CDD:275381 4/24 (17%)
leucine-rich repeat 429..455 CDD:275381 11/25 (44%)
leucine-rich repeat 456..480 CDD:275381 4/22 (18%)
leucine-rich repeat 481..500 CDD:275381
leucine-rich repeat 506..529 CDD:275381
Fbxl15NP_001101073.1 F-box_FBXL15 19..62 CDD:438898 12/44 (27%)
leucine-rich repeat 62..88 CDD:275381 7/26 (27%)
FBXL3_LRR-like <71..146 CDD:480268 19/75 (25%)
leucine-rich repeat 89..115 CDD:275381 7/25 (28%)
Interaction with SMURF1. /evidence=ECO:0000250 113..269 42/163 (26%)
leucine-rich repeat 116..141 CDD:275381 5/24 (21%)
AMN1 <139..>268 CDD:187754 36/135 (27%)
leucine-rich repeat 142..167 CDD:275381 7/30 (23%)
leucine-rich repeat 168..194 CDD:275381 7/25 (28%)
leucine-rich repeat 195..220 CDD:275381 4/24 (17%)
leucine-rich repeat 221..245 CDD:275381 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

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