DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and Fbxl19

DIOPT Version :10

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001408690.1 Gene:Fbxl19 / 233902 MGIID:3039600 Length:696 Species:Mus musculus


Alignment Length:530 Identity:123/530 - (23%)
Similarity:187/530 - (35%) Gaps:140/530 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSPSALTFEALE--------E 60
            ||.|...| |...|..:.:...:.|:..||......:.:   .|.||..|....|.        .
Mouse   216 RKEREGGN-EPPTPRKKVKGGRERHLKKVGGDACLLRGA---DPGSPGLLPPRVLNPSQAFSSCH 276

  Fly    61 MGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASVSRMAHQLQHTQRL--SLGSTGDITL 123
            .|:...:.|:......||...||.:.|....       .:.|.....|..:|:  :..|:.|...
Mouse   277 PGLPPENWEKPKPPIASAEGPAVPSPSPQRE-------KLERFKRMCQLLERVPDTSSSSSDSDS 334

  Fly   124 DSPAVEDSLSMSRQSAEKLQILAQAKRSSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLN 188
            ||.:...|||......|    ....:|.:.||.|. ..|...:|...|           ||..  
Mouse   335 DSDSSGTSLSEDEAPGE----ARNGRRPARGSSGE-KENRGGRRAIRP-----------GTGG-- 381

  Fly   189 FQPSTSRLAQVRQAKKPSTTNITTRIVAADSFFVFRTPAMSAH-----INSGINYFERLSDEIL- 247
              |..|  ..:..|..|....:...:|        |.|..|..     :.:|       ||..| 
Mouse   382 --PLLS--WPLGPAPPPRPPQLERHVV--------RPPPRSPEPDTLPLAAG-------SDHPLP 427

  Fly   248 ----LDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLR-TIRPGALEQIVRRGVLVIRL 307
                |.:|:.|..:.|.....|||.::|...|:.||.|:||..| ::.|..|..:|||       
Mouse   428 RAAWLRVFQHLGPRELCVCMRVCRTWSRWCYDKRLWPRMDLSRRKSLTPPMLSGVVRR------- 485

  Fly   308 AQTSIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISLEN------------ 360
                  :|             :.||||...:::..|:.||:..:.|:::.|..            
Mouse   486 ------QP-------------RALDLSWTGVSKKQLMWLLNRLQGLQELVLSGCSWLSVSALGSA 531

  Fly   361 ----IELDDDICAEIAKNEALEAVNL---------TMASG--------------LTSNSVRLMME 398
                :.|.|....|..|:..|..:.|         |.:.|              ||..|:||::.
Mouse   532 PLPALRLLDLRWIEDVKDSQLRELLLPPPDTKPGQTESRGRLQGVAELRLAGLELTDASLRLLLR 596

  Fly   399 SLTSLSSLNISWT----DLSADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLEL 459
            ....||:|::|..    |.|...:||..:.:...|:.||:|||.|:  ..|...|.:|||:|..|
Mouse   597 HAPQLSALDLSHCAHVGDPSVHLLTAPTSPLRETLVHLNLAGCHRL--TDHCLPLFRRCPRLRRL 659

  Fly   460 DLSDCNSLTP 469
            ||..|..|:|
Mouse   660 DLRSCRQLSP 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 14/46 (30%)
leucine-rich repeat 302..327 CDD:275381 1/24 (4%)
AMN1 309..480 CDD:187754 50/204 (25%)
leucine-rich repeat 328..352 CDD:275381 7/23 (30%)
leucine-rich repeat 353..376 CDD:275381 6/38 (16%)
leucine-rich repeat 377..402 CDD:275381 9/47 (19%)
leucine-rich repeat 403..428 CDD:275381 8/28 (29%)
leucine-rich repeat 429..455 CDD:275381 11/25 (44%)
leucine-rich repeat 456..480 CDD:275381 7/14 (50%)
leucine-rich repeat 481..500 CDD:275381
leucine-rich repeat 506..529 CDD:275381
Fbxl19NP_001408690.1 zf-CXXC <52..79 CDD:366873
PHD_FXL19 89..150 CDD:277115
F-box_JHDM 423..465 CDD:438894 13/41 (32%)
AMN1 468..667 CDD:187754 55/226 (24%)
leucine-rich repeat 488..511 CDD:275381 7/22 (32%)
leucine-rich repeat 512..535 CDD:275381 2/22 (9%)
leucine-rich repeat 573..600 CDD:275381 5/26 (19%)
leucine-rich repeat 601..627 CDD:275381 8/25 (32%)
leucine-rich repeat 631..655 CDD:275381 11/25 (44%)
leucine-rich repeat 656..680 CDD:275381 7/14 (50%)
Blue background indicates that the domain is not in the aligned region.

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