DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skp2 and fbxl21p

DIOPT Version :9

Sequence 1:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_002935952.1 Gene:fbxl21p / 100489356 XenbaseID:XB-GENE-987711 Length:458 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Skp2NP_730815.2 F-box-like 239..284 CDD:289689
leucine-rich repeat 302..327 CDD:275381
AMN1 309..480 CDD:187754
leucine-rich repeat 328..352 CDD:275381
leucine-rich repeat 353..376 CDD:275381
leucine-rich repeat 377..402 CDD:275381
leucine-rich repeat 403..428 CDD:275381
leucine-rich repeat 429..455 CDD:275381
leucine-rich repeat 456..480 CDD:275381
leucine-rich repeat 481..500 CDD:275381
leucine-rich repeat 506..529 CDD:275381
fbxl21pXP_002935952.1 F-box-like 66..109 CDD:372399
leucine-rich repeat 204..229 CDD:275381
leucine-rich repeat 230..255 CDD:275381
leucine-rich repeat 256..281 CDD:275381
leucine-rich repeat 282..316 CDD:275381
leucine-rich repeat 327..363 CDD:275381
AMN1 <348..>422 CDD:187754
leucine-rich repeat 364..390 CDD:275381
leucine-rich repeat 391..416 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR16134
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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