DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1103 and Clrn1

DIOPT Version :9

Sequence 1:NP_001036660.1 Gene:CG1103 / 40547 FlyBaseID:FBgn0037235 Length:230 Species:Drosophila melanogaster
Sequence 2:NP_700433.1 Gene:Clrn1 / 229320 MGIID:2388124 Length:250 Species:Mus musculus


Alignment Length:236 Identity:48/236 - (20%)
Similarity:72/236 - (30%) Gaps:84/236 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LVFSTFFGSCLAIGLLLVSMTTNHWVRATPRRK------NSSDAK-----GEFNFGLFFGNYHLN 66
            |.|....|...|:|       |..||:||...|      |:|..:     ||..:|||.|.....
Mouse    16 LSFLCALGVVTAVG-------TPLWVKATILCKTGALLVNASGKELDKFMGEMQYGLFHGEGVRQ 73

  Fly    67 PGFGVR------TNSVDVYTFVRTENDDT--------------------SFWLWLLTTLGTGFAL 105
            .|.|.|      .:..:.|:....:.:..                    |..|.:||.:||.|.:
Mouse    74 CGLGARPFRFSSRSMKERYSLYEDKGETAVFPDLVQAIPVSIHINIILFSMILVVLTMVGTAFFM 138

  Fly   106 -------LACAVAAIAAVLKSASAAKKGGTMMLLLTSNICA--AGAQIVAFVA------------ 149
                   .......:...|.|..:...|..:|:|..|.:..  ...:|..|..            
Mouse   139 YNAFGKPFETLHGPLGLYLVSFISGSCGCLVMILFASEVKVHRLSEKIANFKEGTYAYRTQNENY 203

  Fly   150 ----WLVQFYQYFIHNVLLTEQQQQHWYSNGL--AYLGYSF 184
                |:| |..:|:|            :.|||  ...|:.|
Mouse   204 TTSFWVV-FICFFVH------------FLNGLLIRLAGFQF 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1103NP_001036660.1 Claudin_2 22..203 CDD:258170 45/227 (20%)
Clrn1NP_700433.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842057
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR31548
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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