DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt14 and Tc2n

DIOPT Version :9

Sequence 1:NP_001262249.1 Gene:Syt14 / 40544 FlyBaseID:FBgn0261086 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001020323.1 Gene:Tc2n / 500707 RGDID:1563876 Length:489 Species:Rattus norvegicus


Alignment Length:600 Identity:107/600 - (17%)
Similarity:219/600 - (36%) Gaps:191/600 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 NCC-------DERHLAVKCVQKITRKRRYENTSSDSEEDILRRLRWHQQHQLGEKPGGYGLGISQ 111
            :||       .|:|       |.:.::.::.::|:|:..|                     ||:|
  Rat     8 SCCRGCFYGETEKH-------KFSVEKEFKASASNSQNTI---------------------GITQ 44

  Fly   112 ANPLTAQSFNYHQAGASAD--LQRV---------TVSRDPLAIAERGKVGIPSSHSECSSNDSME 165
            ...:.|:.    |.|.:.|  |.::         .|.|..|:..:....|.|             
  Rat    45 LTSVLAKP----QVGCNEDYLLSKLPCDGKEVQFVVPRFKLSYIQPRTQGTP------------- 92

  Fly   166 VSVDSHTGVLTGLSKAT---------TTVPHPAT-AFRNPCGEHRAKTQALRYQHRVNVAAPPKL 220
                ||...|.|.::|:         ::..|.:. ...|||         ..|||     ..|.|
  Rat    93 ----SHLDELEGSARASFGDQKTELCSSFYHGSIYDVYNPC---------YMYQH-----FSPDL 139

  Fly   221 DKERDNVLVVP------------------MVNAYSINNNNNSITTSNNH-----------PSSNN 256
            .:.     .:|                  :..:..::.:...:|||:..           |||::
  Rat   140 SRR-----FLPHCETKTLYGSVCDLRTSKLPGSPGLSKSMLDLTTSSQRFIQRHDSFSSVPSSSS 199

  Fly   257 NDDEPLFDTSDLRSIKSDDLLVGVDQKEPAVQRGPIELELSLLYDAPMRKMTVHVMQAKNLP-PL 320
            :...   .....||:  |.:.:..|:::..      .|.:.|.|::...::.:.::|.:::. |.
  Rat   200 SRKN---SQGSNRSL--DTITLSGDERDLG------RLNVKLFYNSSAEQIWITILQCRDISWPS 253

  Fly   321 GSGQTTHTQVRMLMLPSKKQKLKTKIRSGENP-QYMESFLLHRVNPEDVNNMGLRVRLYGCERLR 384
            ..|.|....::.::..||....|:..:.|.|. .:||:|:             ..::|...:.:|
  Rat   254 SYGDTPTISIKGILTLSKPIHFKSSAKEGSNAIDFMETFV-------------FAIKLQNLQAVR 305

  Fly   385 ----------KERLIGEAYVSFATVDLELETNLWLPLEPRNTSSGLGSTSDLLSLARSESAGSTS 439
                      |::.|||..:|..|:..: |.:..|.:.|.:.          .|:.:        
  Rat   306 LAFKIQTQTPKKKTIGECSLSLRTLSTQ-EMDYSLEIIPPSK----------FSVCQ-------- 351

  Fly   440 SMQHGGVSELLLGLSYNGVTGRLSVEIIKGSQFRSLSLNKAPDTYVKMVMVSSIGQEISRAKTSI 504
                   :||.||..:..|..|:.::|::.....|.|...|...:||:.|.|| |:.|.:.||.:
  Rat   352 -------AELELGTCFQAVNSRIQLQILEAQYLPSSSTPLALSFFVKVGMFSS-GELIYKKKTRL 408

  Fly   505 RRGQPNPL-FKETFAFQVALFQLNDVTLMISVYAKRHMKKNEMVGWFSLGLNSSGSEEVAHWADV 568
            .:.....: :.||..|.:...: .::..:|.:|::..:::...||...:..:|:..|.|..|.:.
  Rat   409 LKASSGRVKWGETMIFPLIQTE-KEIVFLIKLYSRSSVRRKHFVGQLWISEDSNNVEAVNQWKET 472

  Fly   569 CEMPKGEMLARWHVL 583
            ...|: :::.:||.|
  Rat   473 VTNPE-KVVIKWHKL 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt14NP_001262249.1 C2A_Synaptotagmin-14_16 291..413 CDD:176035 25/133 (19%)
C2B_Synaptotagmin-14_16 446..584 CDD:176053 33/138 (24%)
Tc2nNP_001020323.1 C2A_Tac2-N 239..341 CDD:176066 22/115 (19%)
C2B_Tac2-N 352..486 CDD:176074 33/136 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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