DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps24 and chmp2a

DIOPT Version :10

Sequence 1:NP_649451.1 Gene:Vps24 / 40542 FlyBaseID:FBgn0037231 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_998682.1 Gene:chmp2a / 798901 ZFINID:ZDB-GENE-040426-2922 Length:220 Species:Danio rerio


Alignment Length:223 Identity:56/223 - (25%)
Similarity:117/223 - (52%) Gaps:11/223 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQAAQKNDRDTCVILAKEI 67
            ||||  .|.|:|.:::....:.:....|||:.:.::::|:|:...:|:.|::...|...|:||::
Zfish     4 LFGR--RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDL 66

  Fly    68 VNARKAINRIYTSKAHLNSIQMQMKNQLSTLRVAGSLQKSTEVLQAMQSLVRYPELAGIMRDMSK 132
            |..|:.:.:....:|::.::.::::...|...:|.:::..|:.:..|...::.|::..||.:..:
Zfish    67 VRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFER 131

  Fly   133 EMMKAGIIEEMLDETMDSLEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEAT--PADKASAS 195
            :.....:.|||:::.:|.....|:.|||:...|.:||.|     || ..|..|.:  ||...|.|
Zfish   132 QSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDE-----LG-LTLSDELSNLPATGGSLS 190

  Fly   196 -AARVEAEQDDEEGEELQEMQSRLASLR 222
             ||..:||......:...:::.||.:||
Zfish   191 VAAGKKAEPQPTLADADADLEERLNNLR 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps24NP_649451.1 Snf7 18..187 CDD:460896 37/168 (22%)
chmp2aNP_998682.1 Snf7 17..185 CDD:460896 38/173 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..220 11/35 (31%)
MIT-interacting motif 208..218 2/9 (22%)

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