DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps24 and CHMP2B

DIOPT Version :9

Sequence 1:NP_001303457.1 Gene:Vps24 / 40542 FlyBaseID:FBgn0037231 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_647947.1 Gene:CHMP2B / 38599 FlyBaseID:FBgn0035589 Length:212 Species:Drosophila melanogaster


Alignment Length:225 Identity:65/225 - (28%)
Similarity:114/225 - (50%) Gaps:22/225 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQAAQKNDRDTCVILAKEI 67
            :||:.|:  .|||.:|....:||....::|:.|.::.||.|::..:::.|...:.|.|.||||::
  Fly     5 IFGKKPT--VKEQQRENDRSLRKATRDIERERRKMEEEERKLELEIRRNAAAGNNDACRILAKQL 67

  Fly    68 VNARKAINRIYTSKAHLNSIQMQMKNQLSTLRVAGSLQKSTEVLQAMQSLVRYPELAG-IMRDMS 131
            |..||..:|.|.:...:.||..|.||..:.:.::.::..:.:.:..|..::| ||..| .:|...
  Fly    68 VEIRKQKSRTYAAAGKIQSIGYQNKNMGANIALSEAMGTTAKTMGEMNKVMR-PEAIGETVRQFQ 131

  Fly   132 KEMMKAGIIEEMLDETMDSLEESEELEEEASKEVDKVLWEI---TDGKLGEAPLPPEATPADKAS 193
            ...||..:.:||:::|:|.:......|||::..|:|||.||   ..||:...|    ||.:....
  Fly   132 AANMKMEMTDEMINDTLDDMLNESGDEEESNAVVNKVLDEIGIEISGKMSSIP----ATGSSDFE 192

  Fly   194 ASAARVEAEQDDEEGEELQEMQSRLASLRS 223
            .|..|.|           :::..:||.|||
  Fly   193 TSGKRTE-----------KDIADQLAKLRS 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps24NP_001303457.1 Snf7 18..187 CDD:281366 49/172 (28%)
CHMP2BNP_647947.1 Snf7 18..186 CDD:281366 49/172 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438212
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5491
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10476
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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