DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and DBP1

DIOPT Version :10

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_015206.1 Gene:DBP1 / 855984 SGDID:S000006040 Length:617 Species:Saccharomyces cerevisiae


Alignment Length:455 Identity:171/455 - (37%)
Similarity:246/455 - (54%) Gaps:41/455 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 GETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVL 233
            |:....||..|......:.::..:.......|||:|...:|.|..||||:..|.||||||..|:.
Yeast   146 GKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLF 210

  Fly   234 PVIMFALEQ------EYSLPFERNEG-PYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSC 291
            |:.......      |.:..|...:| |..|::.|:||||.|..|..:.::..      ..:|.|
Yeast   211 PLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYR------SWVRPC 269

  Fly   292 LAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRT 356
            :..||.|:...:..:.||..::|||||||.|:|::..::|...:||.:||||||:|||||..:|.
Yeast   270 VVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRH 334

  Fly   357 IFSFFK----GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 417
            |.....    ..||||:||||.|..||:.||..|...:.::|||.|:.|.|:||::.||....|.
Yeast   335 IVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKK 399

  Fly   418 VYLLDCLQKTAPPV-LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDV 481
            ..|||.|......: |||.|.|:..|.:.::|:::..:|.||||.:.|.||.||:.|::....|:
Yeast   400 SALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI 464

  Fly   482 LVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKH 546
            ||||.||::|||.|||.||||||:|.||::||||||||||:...|:||:..| :..|:::..|..
Yeast   465 LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFN-SNNQNIVKGLME 528

  Fly   547 LLIEGKQEVPDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRITECPKLEAVQNKQASNIGRRDY 611
            :|.|..||||.||.:|:.:         :|.|....||.|.             ..:.|.|.|||
Yeast   529 ILNEANQEVPTFLSDLSRQ---------NSRGGRTRGGGGF-------------FNSRNNGSRDY 571

  Fly   612  611
            Yeast   572  571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 77/215 (36%)
SF2_C_DEAD 404..532 CDD:350174 62/128 (48%)
DBP1NP_015206.1 SrmB 156..587 CDD:440279 168/445 (38%)

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