DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and DED1

DIOPT Version :10

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_014847.3 Gene:DED1 / 854379 SGDID:S000005730 Length:604 Species:Saccharomyces cerevisiae


Alignment Length:468 Identity:179/468 - (38%)
Similarity:255/468 - (54%) Gaps:68/468 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 ALMGVAE----LAKGIQYEQ----PIKTAWKP-PRYIREMSEEEREAVRHELRILVEGETPSPPI 176
            |:.||.|    .:.||.::.    |:..:.|. |..|.|.:                    ||| 
Yeast   105 AIFGVPEDPNFQSSGINFDNYDDIPVDASGKDVPEPITEFT--------------------SPP- 148

  Fly   177 RSFREMKFPKGILNGLAAKGIK-----NPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI 236
                        |:||..:.||     .|||:|...:|.|..||||:..|.||||||..|:.||:
Yeast   149 ------------LDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVL 201

  Fly   237 MFAL--------EQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLA 293
            ..:.        |.:.|. ::|...|..:|:.|:||||.|..:..:.::..      ..:::|:.
Yeast   202 SESFKTGPSPQPESQGSF-YQRKAYPTAVIMAPTRELATQIFDEAKKFTYR------SWVKACVV 259

  Fly   294 MGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIF 358
            .||.|:...|..|.||..::|||||||.|:|::..::|...:||.:||||||:|||||..:|.|.
Yeast   260 YGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIV 324

  Fly   359 SFFK----GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVY 419
            ....    |:||||:||||.|..||:.||..|...:.::|||.|:.|.|:||:|.||:.:.|...
Yeast   325 EDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSA 389

  Fly   420 LLDCLQ-KTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLV 483
            |||.|. .|....|||.|.|:..|.:.::|:::...|.||||.:.|.||.||:.|:|.|...:||
Yeast   390 LLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

  Fly   484 ATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLL 548
            ||.||::|||.|||.||||||:|.|:::||||||||||:...||||...| :...:::..|..:|
Yeast   455 ATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFN-SENSNIVKGLHEIL 518

  Fly   549 IEGKQEVPDFLDE 561
            .|..||||.||.:
Yeast   519 TEANQEVPSFLKD 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 84/221 (38%)
SF2_C_DEAD 404..532 CDD:350174 65/128 (51%)
DED1NP_014847.3 SrmB 141..526 CDD:440279 166/425 (39%)

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