Protein Alignment abs and Ddx43

DIOPT Version :10

• Sequence 1: NP_524220.1
• Gene: abs / 40530
• FlyBaseID: FBgn0015331
• Length: 619
• Species: Drosophila melanogaster
• Sequence 2: NP_001414562.1
• Gene: Ddx43 / 682138
• RGDID: 1586947
• Length: 646
• Species: Rattus norvegicus
• Alignment Length: 543
• Identity: 166/543 - (30%)
• Similarity: 268/543 - (49%)
• Gaps: 76/543 - (13%)

  Fly    34 KKQHMIKLGRIVQLVSETAQP-----KSSSENENEDD-----SQGAHDVETWGRKYNISLLDQHT 88
            |||.....|..|.:::  .||     .|:||:..:|.     .|...|...|
  Rat   132 KKQQNYIPGHRVDIIA--FQPTVGTDTSTSESVTDDQPLIDWDQIREDALKW------------- 181

  Fly    89 ELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSE 153
            |.||.|:   |..::|....|.....|::|             :|.:.     |:...:.....:
  Rat   182 EKKKWAD---LPPIKKNFYIESATTSSMSQ-------------VQIDN-----WRKENFNITCDD 225

  Fly   154 EEREAVRHELRILVEGE-TPSP-PIRSFREM--KFPKGILNGLAAKGIKNPTPIQVQGLPTVLAG 214
                        |.:|| .|.| ||..|.:.  .:|: ::..:...|.:.|||||.|..|.||.|
  Rat   226 ------------LKDGEKRPIPNPICKFEDAFHSYPE-VMENIKRAGFQKPTPIQSQAWPIVLQG 277

  Fly   215 RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKH 279
            .||||:|.||:||||.:::|..:....|  .|..|:..||..|::.|:||||.|.......||
  Rat   278 IDLIGVAQTGTGKTLSYLMPGFIHLDSQ--PLAREQRNGPGMLVLTPTRELALQVEAECSKYS-- 338

  Fly   280 LQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADR 344
                 ..:::|....||......:..:|:||.|::||||||.|:.....:.|....||.:||||:
  Rat   339 -----YGDLKSVCVYGGGDRDGQIQDVSKGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADK 398

  Fly   345 MIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMN-VTQQV 408
            |:|||||..:..|....:..|||::.|||.|..::..|:|.|.:|:.:.||.....::: |.|.:
  Rat   399 MLDMGFEPQIMKILLDVRPDRQTIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNI 463

  Fly   409 EYVKQEAKVVYLLDCLQKTAP--PVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAV 471
            ....:|.|..::...|:..:|  .|::|..:|...|.:...|:|:.:...::||.::|.:|.:|:
  Rat   464 IITTEEEKRTHIQTFLENMSPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKAL 528

  Fly   472 DAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 536
            :.::.||..:|:|||:||:|||..::.||.|||.|.:||.||||:|||||:...|::.|||.: .
  Rat   529 ENFKTGKVRILIATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITR-N 592

  Fly   537 EQSVLLDLKHLLIEGKQEVPDFL 559
            :..:..:|.::|....|.:|:.|
  Rat   593 DWRIATELINILERANQNIPEEL 615

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abs	NP_524220.1	DEADc_DDX41	188..393	CDD:350709	76/204 (37%)
		SF2_C_DEAD	404..532	CDD:350174	47/129 (36%)
Ddx43	NP_001414562.1	None