DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and ddx17

DIOPT Version :10

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001313320.2 Gene:ddx17 / 556764 ZFINID:ZDB-GENE-030131-18 Length:667 Species:Danio rerio


Alignment Length:448 Identity:170/448 - (37%)
Similarity:245/448 - (54%) Gaps:32/448 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 IREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVL 212
            :..||:.:.|..|.:..|.|.|.....|:.:|.:.:||:.:::.|..:..|.||.||.||.|..|
Zfish    66 VHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLAL 130

  Fly   213 AGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYS 277
            :|||::|||.|||||||.::||.|:....|.|   .||.:||..|::.|:||||:|..::...|.
Zfish   131 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY---LERGDGPICLVLAPTRELAQQVQQVAFDYG 192

  Fly   278 KHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEA 342
            |      ...|:|....||.|....:..:.|||.|.:||||||:|.|:.....|..|.||.:|||
Zfish   193 K------SSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEA 251

  Fly   343 DRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAG-AASMNVTQ 406
            |||:|||||..:|.|....:..||||::|||.||:::..|...|...|.||:|... :|:.|:.|
Zfish   252 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQ 316

  Fly   407 QVEYV---KQEAKVVYLL-DCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEER 467
            .|:..   :::.|::.|: :.:.:.....:||.|.|:..|.:...:...|..|:.|||.|.|.||
Zfish   317 IVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPER 381

  Fly   468 SRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLI 532
            ...:..:|.||..:|:||||||:|||..:|:.|||||.|:..|:||||||||.||..||.|.|..
Zfish   382 DWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 446

  Fly   533 NKTTEQSVLLDLKHLLIEGKQEV-PDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRI 589
            .....:.. .||..:|.|.:|.: |..|         |.:|.|.       ||.|.|:
Zfish   447 TPGNLRQA-RDLVRVLEEARQAINPKLL---------QLVDTGR-------GGGGGRM 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 87/204 (43%)
SF2_C_DEAD 404..532 CDD:350174 53/131 (40%)
ddx17NP_001313320.2 None

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