DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and ddx23

DIOPT Version :10

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001017213.2 Gene:ddx23 / 549967 XenbaseID:XB-GENE-986212 Length:806 Species:Xenopus tropicalis


Alignment Length:619 Identity:205/619 - (33%)
Similarity:309/619 - (49%) Gaps:82/619 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KRYRRSSKSSE-EGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQPKSSSENE------- 61
            :|.||.....| .|:.|:|..:.....|::.|:......|.:..:.:..:.:..::.:       
 Frog   200 RRERRERIERENNGNEDDEGRIKVREEKDKTKELQAIKERYLGGLKKRRRTRHLNDRKFVFEWDA 264

  Fly    62 NEDDS-------QGAHDVETWGRKY--NISLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIA 117
            :||.|       :..|.|:..||.:  .|.|..|..|..:...    ..:||:...|||..|.:.
 Frog   265 SEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYG----DLMEKRRTLEEKEQEEVR 325

  Fly   118 QQKALMGVAELAKGIQYEQPIKTAWKPPRY----IREMSEEEREAVRHELRILVEGETPSPPIRS 178
            .:|       |.|     :..|..|....:    :.||::.:....|.:..|..:|.....||||
 Frog   326 LRK-------LRK-----KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRS 378

  Fly   179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQE 243
            :.:...|..||..:...|.|.|||||.|.:|..|..||:||:|.||||||..|::|::::..   
 Frog   379 WVDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT--- 440

  Fly   244 YSLP-----FERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEAL 303
             :||     .|.::|||.:|:.|:||||:|..|....:.|.|      .||:...:||:...:..
 Frog   441 -TLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL------GIRTVAVIGGISREDQG 498

  Fly   304 DVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIF---------- 358
            ..:..|..||:||||||:|:|:.:.|.|..|.|:.:||||||||||||.||:.|.          
 Frog   499 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVTNQKP 563

  Fly   359 -------------SFFKGQ---RQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQ 407
                         :|..|:   |||::|:||||..::..|||.|.:|..:.:|.||.....|.|:
 Frog   564 DTDEAEDPEKMTANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQK 628

  Fly   408 VEYVKQEAKVVYLLDCLQK-TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAV 471
            |..:.:..|...||..|:| ..||::||..:|:..|.:.:.|...|..|..:||||.||:|..|:
 Frog   629 VFLMSEAEKRKKLLAILEKGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFAL 693

  Fly   472 DAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 536
            ...:.|.||:|||||||.:|:|..:|..|:||||..:||:|:||||||||:...|:|.|.:.| .
 Frog   694 SNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK-E 757

  Fly   537 EQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQH 570
            :.||..|||..::|  ..|.....|||...:.||
 Frog   758 DSSVFYDLKQAILE--SPVSSCPPELANHPDAQH 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 90/235 (38%)
SF2_C_DEAD 404..532 CDD:350174 57/128 (45%)
ddx23NP_001017213.2 U2AF_lg 7..>99 CDD:273727
SrmB 381..769 CDD:440279 157/398 (39%)
Blue background indicates that the domain is not in the aligned region.

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