DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and CG7878

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster


Alignment Length:590 Identity:176/590 - (29%)
Similarity:295/590 - (50%) Gaps:57/590 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VPVKERKKQHMIKL-----GRIVQLVSETAQPKSSSENENEDDSQGAHDVETWGRKYNISLLDQH 87
            |.||..|...::|:     ..::..::...:..::|.:..:|.....|..   ..:|:....|::
  Fly   122 VRVKLDKCDLIVKITGSIQSNVIDAINHVRKQVTNSGDRGQDRDNRDHGS---NERYDGGGYDRY 183

  Fly    88 TELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQ--PI-KTAWKPPRYIR 149
            .     ..:.:.:....:..::...:..|...:||...:..|...::.:  |: |..:|....:.
  Fly   184 K-----GNSYEFNPTSSESNKDNGDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVA 243

  Fly   150 EMSEEEREAVRHE-LRILV-------EGETPSP---PIRSFRE--MKFPKGILNGLAAKGIKNPT 201
            .:::.|.|.:|.| .:|.|       ||||..|   |:.:|.:  .::| .:|..:...|...|:
  Fly   244 NLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYP-DMLEEITKMGFSKPS 307

  Fly   202 PIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEY-SLPFERNEGPYGLIICPSREL 265
            |||.|..|.:|.|.|:||||.||:||||.|:||.:   :..|| |.|.....|...|::.|:|||
  Fly   308 PIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGM---IHTEYQSTPRGTRGGANVLVLAPTREL 369

  Fly   266 AKQTHEIIQHYSKHLQACGMPEIRSCLAMGG---LPVSEALDVISRGVHIVVATPGRLMDMLDKK 327
            |.|....::.||..    ||..:  |:..||   :.:|:    :.||..|::.|||||.|::...
  Fly   370 ALQIEMEVKKYSFR----GMKAV--CVYGGGNRNMQISD----LERGAEIIICTPGRLNDLIMAN 424

  Fly   328 ILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTI 392
            ::.:....||.:||||||:|||||..:|.:....:..|||::.|||.|..::..|:|.:..|:.:
  Fly   425 VIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQV 489

  Fly   393 NVGRAG-AASMNVTQQVEYVKQEAKVVYLLDCLQK---TAPPVLIFAEKKQDVDCIHEYLLLKGV 453
            .||... ||:.:|.|.::.::.:......:....|   :...::||..:|...|.:...|.|.|.
  Fly   490 CVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGF 554

  Fly   454 EAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGR 518
            ....|||.:||.:|.:|:...:.|...:||||||||:|||..::.||||||.|.:||.||||:||
  Fly   555 MTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGR 619

  Fly   519 TGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHGCTYCG 583
            |||:..:|.:.:...: .:.::..:|..:|.|.:|||||.|..:|...:... |...:.|    |
  Fly   620 TGRAGRQGTSISFFTR-EDWAMAKELIEILQEAEQEVPDELHNMARRFKAMK-DKRAAEG----G 678

  Fly   584 GLGHR 588
            |.|.|
  Fly   679 GFGGR 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 79/219 (36%)
DEXDc 192..397 CDD:214692 78/208 (38%)
Helicase_C 414..523 CDD:278689 45/111 (41%)
CG7878NP_649767.1 KH-I 92..150 CDD:238053 5/27 (19%)
DEADc 288..489 CDD:238167 78/214 (36%)
DEXDc 298..505 CDD:214692 81/219 (37%)
Helicase_C 514..624 CDD:278689 45/109 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451496
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47958
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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