DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abs and CG6418

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_648413.1 Gene:CG6418 / 39218 FlyBaseID:FBgn0036104 Length:791 Species:Drosophila melanogaster


Alignment Length:620 Identity:197/620 - (31%)
Similarity:300/620 - (48%) Gaps:96/620 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQPKSSSEN-----ENEDDSQGA 69
            |:|..|:.|.|.:      |:    :|.|..:.:.|:.......||..::.     ::|||.:..
  Fly   121 SAKKQEDSDSDED------PL----EQFMAGINQQVEKEKRQQAPKPPTQAVRGDIDDEDDEESY 175

  Fly    70 HDVETWGRKY-----NISLLDQHTELK--------KIAEAKKLSAVEKQLREEEKIMESIAQQKA 121
            :       :|     |..|.|:.::.:        .||..||     |.:.....|..|      
  Fly   176 Y-------RYMKENPNAGLRDEGSDQEIEYDEDGNPIAPPKK-----KDIDPLPPIYHS------ 222

  Fly   122 LMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPK 186
                     .|:||...|..:.....|..:.:|:...:|..|.:.|.|.:|..|:.||....|.:
  Fly   223 ---------EIEYEPFEKNFYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDE 278

  Fly   187 GILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERN 251
            .::..:.......|||||.|.:||.|:|||:||||.||||||..|:.|::|..::|:...|   .
  Fly   279 QLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKP---G 340

  Fly   252 EGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316
            :||.|||:.|:|||:.|.:...:.:.|      :..:......||....|....:.:|..|:|||
  Fly   341 DGPIGLILAPTRELSLQIYNEAKKFGK------VYNLNVVCCYGGGSKWEQSKALEQGAEIIVAT 399

  Fly   317 PGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNF 381
            |||::||:..|...|....:|.:||||||..||||..||:|.:..:..||.|:||||..|:|:..
  Fly   400 PGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERL 464

  Fly   382 ARSALVKPVTINVGRAGAASMNVTQQVEYV------KQEAKVVYLLDCLQKTAPPVLIFAEKKQD 440
            ||..|..||.|..|....|:.::||.| ||      |....:.:|:..|.:.:  ||||..||.|
  Fly   465 ARDVLSDPVRIVQGDLNEANQDITQSV-YVFPNPLQKWNWLLCHLVKFLSEGS--VLIFVTKKVD 526

  Fly   441 VDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDM 505
            .:.:...||:|....:.:||..||.:|::.:..::..:.|:|||||||::|||.|::::|:|||.
  Fly   527 AETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDT 591

  Fly   506 PDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLL--IEG-KQEVPDFLDELAPETE 567
            ..|||.:.||||||||:..||.|.||:....::..    .||:  :|| .|.|||.|.|||.::.
  Fly   592 ARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFA----GHLVRNLEGADQLVPDDLMELAMKSS 652

  Fly   568 ----------------HQHLDLGDSHGCTYCGGLG 586
                            :.|..||........||.|
  Fly   653 WFRSSRFKQGKGKRPTNTHTGLGYREKGNGGGGYG 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 83/213 (39%)
DEXDc 192..397 CDD:214692 83/204 (41%)
Helicase_C 414..523 CDD:278689 44/108 (41%)
CG6418NP_648413.1 DEADc 271..475 CDD:238167 83/212 (39%)
DEXDc 284..489 CDD:214692 84/213 (39%)
Helicase_C 504..609 CDD:278689 44/106 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451730
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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