DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abs and CG9253

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_610090.1 Gene:CG9253 / 35379 FlyBaseID:FBgn0032919 Length:507 Species:Drosophila melanogaster


Alignment Length:532 Identity:160/532 - (30%)
Similarity:258/532 - (48%) Gaps:91/532 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 DQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIR 149
            |:.|:|:...|.:.|.:.|:|..|:....|. ..:.||.|..:........:..|..||....  
  Fly     7 DEQTQLQTSDEEEDLGSEEEQEDEDNNHKEG-DSEAALSGEDDKGSEDDAAEEQKLTWKDLGL-- 68

  Fly   150 EMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAG 214
                  .||:                .::..|:|:             |.|:.||.:.:|..|.|
  Fly    69 ------NEAL----------------CQACDELKW-------------KAPSKIQREAIPVALQG 98

  Fly   215 RDLIGIAFTGSGKTLVFVLPVIMFALE--QEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYS 277
            :|:||:|.||||||..|.||::...||  |.|          :.|::.|:||||.|..|      
  Fly    99 KDVIGLAETGSGKTGAFALPILHALLENPQRY----------FALVLTPTRELAFQIGE------ 147

  Fly   278 KHLQACGMP-EIRSCLAMGGLPVSEALDVISRGV------HIVVATPGRLMDMLDK-KILTLDMC 334
             ..:|.|.. .|:.|:.:||      :|::::|:      ||::||||||:|.|:. |...|...
  Fly   148 -QFEALGSGIGIKCCVVVGG------MDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAI 205

  Fly   335 RYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGA 399
            :||.||||||:::|.||.::..|......:|:|.||||||.||::...|::|..||.:.|.....
  Fly   206 KYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQ 270

  Fly   400 ASMNVTQQVEYVKQEAKVVYLLDCLQKTA-PPVLIFAEKKQDVDCIHEYLLLK--GVEAVAIHGG 461
            ....:.|...::..:.|.|||:..|.:.| ...:||.....:.  :...|:|:  |:.|:.:||.
  Fly   271 TVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNT--VKTALMLRALGLAAIPLHGQ 333

  Fly   462 KDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKG 526
            ..|.:|..|::.::...:.:|::|||||:|||.|:|..|:|:|:|...::|:||:|||.|:...|
  Fly   334 MSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG 398

  Fly   527 LATTLINKTTEQSVLLDLKHLLIEGKQ---------EVPDFLDELAPETEHQHL---DLGDSHGC 579
            .|.||::: .:..:...::|||  |||         ||....:.:|.......|   ||.|:.|.
  Fly   399 KAITLVSQ-YDIELYQRIEHLL--GKQLTLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGG 460

  Fly   580 TYCGGLGHRITE 591
            ...||..|..:|
  Fly   461 HKRGGDTHDDSE 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 80/223 (36%)
DEXDc 192..397 CDD:214692 79/214 (37%)
Helicase_C 414..523 CDD:278689 39/111 (35%)
CG9253NP_610090.1 SrmB 34..498 CDD:223587 152/505 (30%)
DEADc 63..264 CDD:238167 84/260 (32%)
HELICc 274..403 CDD:238034 42/130 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451390
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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