DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abs and Hlc

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster


Alignment Length:496 Identity:120/496 - (24%)
Similarity:209/496 - (42%) Gaps:91/496 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI------- 236
            |.|::..:.||..:|..|.:.||.||...:|.:|.|:|::..|.||||||..:.||:|       
  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSK 75

  Fly   237 MFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSE 301
            :.|.||..|          .:::.|::||.:|:.::|:..   :::||.....:.:|........
  Fly    76 LNASEQYVS----------AVVLAPTKELCRQSRKVIEQL---VESCGKVVRVADIADSSNDTVT 127

  Fly   302 ALDVISRGVHIVVATPGRLMDMLDK-KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQR 365
            ....:|....||||||..|:...:. .::.|.....|.:||||.:...|:|:|.:.:........
  Fly   128 QRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIY 192

  Fly   366 QTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPP 430
            |.:|.|||:...:.......|..|||:.:           ::.|.|.|: ::.:.....::...|
  Fly   193 QAVLVSATLTDDVVRMKGLCLNNPVTLKL-----------EEPELVPQD-QLSHQRILAEENDKP 245

  Fly   431 VLIFAEKK------------QDVD-CIHEYLLLK--GVEAVAIHGGKDQEERSRAVDAYRVGKKD 480
            .:::|..|            ..:| |....|.|:  |:.|..::.......|...:..:..|..|
  Fly   246 AILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYD 310

  Fly   481 VLVATD-------------------------VASKGLDFPNVQHVINYDMPDDIENYVHRIGRTG 520
            :::|:|                         .||:|:||..|.:|||:|.|.|:.:|:||.|||.
  Fly   311 IIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTA 375

  Fly   521 RSNTKG-------LATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHG 578
            |.|.||       :..:.:|.:.|:. |.| .....||:|.:.::..::......::........
  Fly   376 RGNNKGSVLSFVSMKESKVNDSVEKK-LCD-SFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRA 438

  Fly   579 CTYCGGLGHRITE-------CPKLEAV--QNKQASNIGRRD 610
            .|.......||.|       |.||:|.  :||:.....|.|
  Fly   439 ATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHD 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 62/221 (28%)
DEXDc 192..397 CDD:214692 58/212 (27%)
Helicase_C 414..523 CDD:278689 33/148 (22%)
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 62/221 (28%)
DEXDc 24..231 CDD:214692 61/231 (26%)
HELICc 234..386 CDD:238034 36/151 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451773
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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