Protein Alignment abs and Ddx41

DIOPT Version :10

• Sequence 1: NP_524220.1
• Gene: abs / 40530
• FlyBaseID: FBgn0015331
• Length: 619
• Species: Drosophila melanogaster
• Sequence 2: NP_001101516.1
• Gene: Ddx41 / 314336
• RGDID: 1311758
• Length: 622
• Species: Rattus norvegicus
• Alignment Length: 623
• Identity: 404/623 - (64%)
• Similarity: 498/623 - (79%)
• Gaps: 17/623 - (2%)

  Fly     5 KRYRRSSKS-----SEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQPKSSSENENED 64
            ||.|.:..:     ||:.|.|:||||||||:::|::   :.|.:::|     .:.|.::|.|.:|
  Rat     9 KRARTNEATAGGSRSEDEDEDDEDYVPYVPLRQRRQ---LLLQKLLQ-----RRRKGAAEEEQQD 65

  Fly    65 ---DSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVA 126
               :.:|..|....|.:.|:||||||..||:.|||:|.||.||||:|||||:||:|:.:|||.|.
  Rat    66 SGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVK 130

  Fly   127 ELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNG 191
            |:||||.|:.||||:|.||||:..||||..|.||.:..|||||:...|||:||:|||.|..||.|
  Rat   131 EMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 195

  Fly   192 LAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYG 256
            |..|||.:|||||:||:||:|:|||:||||||||||||||.||||||.||||..|||.:.|||||
  Rat   196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260

  Fly   257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLM 321
            ||||||||||:|||.|:::|.:.||....|.:|..|.:||:.|.|.::.|..|||::||||||||
  Rat   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLM 325

  Fly   322 DMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSAL 386
            |:|.||:::||:||||.:||||||||||||.|:|||||:||||||||||||||||||||||:|||
  Rat   326 DLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390

  Fly   387 VKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLK 451
            |||||||||||||||::|.|:|||||:|||:||||:|||||.||||||||||.|||.||||||||
  Rat   391 VKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK 455

  Fly   452 GVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRI 516
            ||||||||||||||||::|::|:|.|||||||||||||||||||.:|||||||||::||||||||
  Rat   456 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 520

  Fly   517 GRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHGCTY 581
            ||||||...|:|||.|||..::|||:|||.||:|.||:||..|..|....|.. ||:|...||.:
  Rat   521 GRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESM-LDIGGERGCAF 584

  Fly   582 CGGLGHRITECPKLEAVQNKQASNIGRRDYLSNTAADY 619
            |||||||||:||||||:|.||.|||||:|||::::.|:
  Rat   585 CGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abs	NP_524220.1	DEADc_DDX41	188..393	CDD:350709	146/204 (72%)
		SF2_C_DEAD	404..532	CDD:350174	105/127 (83%)
Ddx41	NP_001101516.1	SrmB	180..562	CDD:440279	284/381 (75%)