DRSC/TRiP Functional Genomics Resources

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Protein Alignment abs and Ddx5

DIOPT Version :10

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001007614.1 Gene:Ddx5 / 287765 RGDID:619906 Length:615 Species:Rattus norvegicus


Alignment Length:450 Identity:161/450 - (35%)
Similarity:246/450 - (54%) Gaps:30/450 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 EQPIKTAW---KPPRYIREMSEE----------EREAVRHELRILVEGETPSPPIRSFREMKFPK 186
            |:.:|..|   :.|::.:...:|          |.:..|....|.|.|.....|:.:|.|..||.
  Rat    39 EKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPA 103

  Fly   187 GILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPF-ER 250
            .:::.:|.:....||.||.||.|..|:|.|::|:|.|||||||.::||.|:....|    || ||
  Rat   104 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLER 164

  Fly   251 NEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVA 315
            .:||..|::.|:||||:|..::...|.:   ||   .::|....||.|....:..:.|||.|.:|
  Rat   165 GDGPICLVLAPTRELAQQVQQVAAEYCR---AC---RLKSTCIYGGAPKGPQIRDLERGVEICIA 223

  Fly   316 TPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQN 380
            |||||:|.|:.....|....||.:||||||:|||||..:|.|....:..||||::|||.||:::.
  Rat   224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQ 288

  Fly   381 FARSALVKPVTINVGRAG-AASMNVTQQVEY---VKQEAKVVYLL-DCLQKTAPPVLIFAEKKQD 440
            .|...|...:.||:|... :|:.|:.|.|:.   |:::.|::.|: :.:.:.....::|.|.|:.
  Rat   289 LAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRR 353

  Fly   441 VDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDM 505
            .|.:...:...|..|:.|||.|.|:||...::.::.||..:|:||||||:|||..:|:.|||||.
  Rat   354 CDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

  Fly   506 PDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPE 565
            |:..|:|:||||||.||...|.|.|.......:.| .||..:|.|..|.:...|.:|..:
  Rat   419 PNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV-SDLISVLREANQAINPKLLQLVED 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 83/205 (40%)
SF2_C_DEAD 404..532 CDD:350174 50/131 (38%)
Ddx5NP_001007614.1 DEAD-like_helicase_N 6..507 CDD:475120 161/449 (36%)
P68HR 498..532 CDD:429808
P68HR 551..583 CDD:429808
Blue background indicates that the domain is not in the aligned region.

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