Protein Alignment abs and laf-1

DIOPT Version :10

• Sequence 1: NP_524220.1
• Gene: abs / 40530
• FlyBaseID: FBgn0015331
• Length: 619
• Species: Drosophila melanogaster
• Sequence 2: NP_001254859.1
• Gene: laf-1 / 190611
• WormBaseID: WBGene00002244
• Length: 708
• Species: Caenorhabditis elegans
• Alignment Length: 552
• Identity: 181/552 - (32%)
• Similarity: 285/552 - (51%)
• Gaps: 75/552 - (13%)

  Fly    60 NENE-DDSQGAHDVETWGRKYNISLLD-----QHTELKKI--AEAKKLSAVEKQLREEEKIMESI 116
            |.:| .|::|:      ||.||....|     |:|....:  ..::..|..|.:...:|:|
 Worm   143 NRDEGSDNRGS------GRSYNNDRRDNGGDGQNTRWNNLDAPPSRGTSKWENRGARDERI---- 197

  Fly   117 AQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFRE 181
             :|:...|  :|: ||.::          :|             .|:.:...|:....||..|.:
 Worm   198 -EQELFSG--QLS-GINFD----------KY-------------EEIPVEATGDDVPQPISLFSD 235

  Fly   182 MKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALE----- 241
            :...:.|...:...|...|||:|...:|.:..||||:..|.||||||..|::|::...|:
 Worm   236 LSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDA 300

  Fly   242 ---QEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP-VSEA 302
               ...|....:.:.|..|::.|:|||:      :|.:::..:......|.|.|..||.. ..:.
 Worm   301 VHRSVTSSGGRKKQYPSALVLSPTRELS------LQIFNESRKFAYRTPITSALLYGGRENYKDQ 359

  Fly   303 LDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSF----FKG 363
            :..:..|.||::||||||:|::|:.::.::.||||.:||||||:|||||..:|.|...    .|.
 Worm   360 IHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKE 424

  Fly   364 QRQTLLFSATMPKKIQNFARSALVKP-VTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKT 427
            :|.|.:||||.||:||..|:..|.:. |.:.|||.|:.|.|:.|::.:|:::.|..||:|.|..|
 Worm   425 ERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDAT 489

  Fly   428 APP--VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASK 490
            ...  .|:|.|.|:....:..||..:..|.|.|||...|.||.:.:|.:|.|...:||||.||::
 Worm   490 GDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAAR 554

  Fly   491 GLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEV 555
            |||.|||:||||||:|.|::.||||||||||....||||:..| ...:::..:|..|::|..||:
 Worm   555 GLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFN-DKNRNIARELMDLIVEANQEL 618

  Fly   556 PDFLDELAPETEHQHLDLGDSHGCTYCGGLGH 587
            ||:|:.::.       |:....|....||.|:
 Worm   619 PDWLEGMSG-------DMRSGGGYRGRGGRGN 643

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abs	NP_524220.1	DEADc_DDX41	188..393	CDD:350709	76/218 (35%)
		SF2_C_DEAD	404..532	CDD:350174	59/129 (46%)
laf-1	NP_001254859.1	SrmB	233..619	CDD:440279	148/392 (38%)