DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abs and ddx-23

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_498260.2 Gene:ddx-23 / 175818 WormBaseID:WBGene00017162 Length:730 Species:Caenorhabditis elegans


Alignment Length:611 Identity:196/611 - (32%)
Similarity:309/611 - (50%) Gaps:91/611 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KSSEEGDLDNEDYVPYV--PVKER---KKQHMIKLGRIV---QLVSETAQPKSSSENENEDDSQG 68
            |.....|.|||:.|..:  .||:|   |::...|.||.:   :.|.:....:.:|::.|: ..|.
 Worm   139 KRDRNEDSDNEEDVSKMADAVKDRYLGKQKEKKKRGRRLHEKKFVFDWDAGEDTSQDYNK-LYQS 202

  Fly    69 AHDVETWGR------------KYNISLLDQHTELKKIAEAK--KLSAVEKQLREEEKIMESIAQQ 119
            .|:::.:||            |...|...:..|.::..:.|  ::..:||:|::|:|:...    
 Worm   203 RHEIQFFGRGSVAGTDVNAQKKEKNSFYQEMMENRRTVDEKEQEMHRLEKELKKEKKVAHD---- 263

  Fly   120 KALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKF 184
                               ...|: .:.:.|||:.:....|.:..|.::|.....|:|::.|..|
 Worm   264 -------------------DRHWR-MKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGF 308

  Fly   185 PKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP-F 248
            |..:...:...|...|||||.|.:|..|..||:||:|.||||||..|:||::::..    ||| .
 Worm   309 PDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWIT----SLPKM 369

  Fly   249 ERNE----GPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRG 309
            ||.|    |||.:|:.|:||||:|..|....:.|.|      .|::...:||....:....:..|
 Worm   370 ERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL------GIKTVSVIGGASREDQGMKLRMG 428

  Fly   310 VHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSF-------------- 360
            |.:|:||||||:|:|:.:.|.|:.|.|:.:||||||:|||||.||:.:..:              
 Worm   429 VEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFD 493

  Fly   361 -----FKG------QRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQE 414
                 .||      .|||::|:|||...|:..||..|.:|..:::|.||..:..|.|.|..|.::
 Worm   494 NEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPED 558

  Fly   415 AKVVYLLDCLQ-KTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGK 478
            .|...|::.|: :..||::||..:|:..|.:.:.|...|.:...:||||.|::|..|:.|.:.|.
 Worm   559 RKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGT 623

  Fly   479 KDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLD 543
            .|:|||||||.:|:|..:|..|:||||...||:|.||||||||:...|.|.|.:. ..:.:|..|
 Worm   624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLT-PDDTAVYFD 687

  Fly   544 LKHLLIEGKQEVPDFLDELAPETEHQ 569
            ||.:|:|  ..|.....|||...:.|
 Worm   688 LKQVLVE--SPVSSCPPELANHPDAQ 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 90/243 (37%)
DEXDc 192..397 CDD:214692 88/234 (38%)
Helicase_C 414..523 CDD:278689 47/109 (43%)
ddx-23NP_498260.2 DEADc 303..533 CDD:238167 89/239 (37%)
DEXDc 316..551 CDD:214692 91/244 (37%)
HELICc 552..676 CDD:238034 51/123 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183201at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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