DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abs and LOC108179221

DIOPT Version :9

Sequence 1:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_017209912.1 Gene:LOC108179221 / 108179221 -ID:- Length:613 Species:Danio rerio


Alignment Length:611 Identity:406/611 - (66%)
Similarity:497/611 - (81%) Gaps:11/611 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRI-VQLVSETAQPKSSSENENEDDSQGAHDVE 73
            |.||:.||. :::|||||||||.||:|.:.|:.|: .:.::|..|..|..|.::||        |
Zfish    13 SEKSASEGS-EDDDYVPYVPVKIRKQQMLQKVMRLRGKGLTEEEQKDSGGEQKDED--------E 68

  Fly    74 TWGRKYNISLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPI 138
            ..|.:.|:||||||..||:.|||:|.||.||||:|||||:||:|:.:|||.|.|:||||.||.||
Zfish    69 GLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYEDPI 133

  Fly   139 KTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPI 203
            ||:|..||||..|.....|.||.:..||||||....||:||||||||:.||.||..|||.:||||
Zfish   134 KTSWNAPRYILSMPAVRHERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPI 198

  Fly   204 QVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQ 268
            |:||:||:|:|||:||||||||||||||.||:|||.||||..|||.:.|||||||||||||||:|
Zfish   199 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSRELARQ 263

  Fly   269 THEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDM 333
            ||.||::|.|.|:..|.|::|..|.:||:.|.|.::|:..|||::|||||||||:|:||:::||:
Zfish   264 THGIIEYYCKLLEDEGAPQMRCALCIGGMSVKEQMEVVKHGVHMMVATPGRLMDLLNKKMVSLDI 328

  Fly   334 CRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAG 398
            ||||.:||||||||||||||:|||||:||||||||||||||||||||||:||||||:||||||||
Zfish   329 CRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG 393

  Fly   399 AASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKD 463
            |||::|.|:|||||:|||:||||:|||||.||||||||||.|||.||||||||||||||||||||
Zfish   394 AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 458

  Fly   464 QEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLA 528
            ||||::|::|::.|||||||||||||||||||.:|||:|||||::||||||||||||||...|:|
Zfish   459 QEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIA 523

  Fly   529 TTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRITECP 593
            ||.|||..::|||:|||.||:|.||:||..|..|....|.. ||:|...|||:|||||||||:||
Zfish   524 TTFINKGCDESVLMDLKALLVEAKQKVPPVLQVLHTGDETM-LDIGGERGCTFCGGLGHRITDCP 587

  Fly   594 KLEAVQNKQASNIGRRDYLSNTAADY 619
            ||||:|.||.:||||:|||:|::.|:
Zfish   588 KLEAMQTKQVTNIGRKDYLANSSMDF 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
absNP_524220.1 DEADc 179..393 CDD:238167 154/213 (72%)
DEXDc 192..397 CDD:214692 148/204 (73%)
Helicase_C 414..523 CDD:278689 91/108 (84%)
LOC108179221XP_017209912.1 SrmB 144..>557 CDD:223587 297/412 (72%)
DEADc_DDX41 183..388 CDD:350709 147/204 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 155 1.000 Domainoid score I4189
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183201at33208
OrthoFinder 1 1.000 - - FOG0005487
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103442
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3903
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.820

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