Protein Alignment abs and ddx43

DIOPT Version :10

• Sequence 1: NP_524220.1
• Gene: abs / 40530
• FlyBaseID: FBgn0015331
• Length: 619
• Species: Drosophila melanogaster
• Sequence 2: NP_001315122.1
• Gene: ddx43 / 100136871
• ZFINID: ZDB-GENE-080204-77
• Length: 719
• Species: Danio rerio
• Alignment Length: 584
• Identity: 192/584 - (32%)
• Similarity: 279/584 - (47%)
• Gaps: 83/584 - (14%)

  Fly    36 QHMIKLGRIVQLVSETAQPKSSSENENEDDSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLS 100
            ||..| ..|..||.|.   ...|...|.:.|||..:...|.                 |.|.|.:
Zfish   154 QHKAK-DMIEDLVHEN---MGGSGYRNGNSSQGYQNNSCWS-----------------ASAVKAA 197

  Fly   101 AVE---------KQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEER 156
            |..         ..|||.....|::..|               :.|:   .|...||...|...|
Zfish   198 AAAAPAPTPIDWTSLRENRDKYEAMKWQ---------------DLPV---LKKNFYIEAKSVAAR 244

  Fly   157 EAVRHELRI------------LVEGE--TPSPPIRSFRE--MKFPKGILNGLAAKGIKNPTPIQV 205
            .|  .|::|            |.:|:  |...|:.:|.|  ..:| ||:..:...|.|.|||||.
Zfish   245 SA--EEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYP-GIMENIVRVGFKKPTPIQS 306

  Fly   206 QGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTH 270
            |..|.||.|.||||||.||:||||.::||..:....|  .:|.::..||..|::.|:||||.|..
Zfish   307 QAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQ--PMPRDKRNGPGMLVLTPTRELALQIE 369

  Fly   271 EIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCR 335
            .....||       ....:|....||...:..:.|::.||.||:||||||.|:...:::.|....
Zfish   370 AECNKYS-------YKGFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSIT 427

  Fly   336 YLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAA 400
            ||.:||||||:|||||..:..|....:..|||::.|||.|..::..|:|.|..|:.:.||....|
Zfish   428 YLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLA 492

  Fly   401 SMNVTQQ-VEYVKQEAKVVYLLDCLQKTAP--PVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGK 462
            ::|..|| |.:|:::.|..|:.|.:.:..|  .||||..||...|.:...|.|:|:...::||.:
Zfish   493 AVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDR 557

  Fly   463 DQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGL 527
            :|.:|..|:..::.|:..:|||||:||:|||..::.||.|||.|.::|.||||:|||||:...|.
Zfish   558 EQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGE 622

  Fly   528 ATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLD---LGDSHGCTYCGGLGHR 588
            :.||:.: .:..|..:|..:|....|:||:.|..:|...|....:   .|...|....||.|.|
Zfish   623 SVTLVTR-EDWRVAAELITILERSGQDVPEELVLMAERYEKHRREKEMFGPRSGRGGGGGGGGR 685

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abs	NP_524220.1	DEADc_DDX41	188..393	CDD:350709	81/204 (40%)
		SF2_C_DEAD	404..532	CDD:350174	52/130 (40%)
ddx43	NP_001315122.1	KH-I_DDX43_DDX53	102..167	CDD:411858	6/13 (46%)
		SrmB	287..669	CDD:440279	149/392 (38%)