DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14641 and NAB6

DIOPT Version :10

Sequence 1:NP_649440.3 Gene:CG14641 / 40529 FlyBaseID:FBgn0037220 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_013589.1 Gene:NAB6 / 854922 SGDID:S000004585 Length:1134 Species:Saccharomyces cerevisiae


Alignment Length:337 Identity:63/337 - (18%)
Similarity:110/337 - (32%) Gaps:108/337 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 EICQTCARLKNVCQTCLLDLEYGLPIQVRDAALKVAD---------NMPQSDVNKEYYIQNIDAQ 124
            ||.....:|:.|    .||..| |.|..||......:         .:.::..|...:.|:|.:.
Yeast   523 EIDMLATKLQGV----ELDGTY-LEINYRDYQTPTIEEHSTHLSNVKISKTTENSRQFSQDIPSP 582

  Fly   125 LQ------DGDGTEAAGAVGRSLAANEMLSKLARTAPYYKRNRPHICSFWVKGECKRGEECPYRH 183
            |.      ..|..::.||:    ...::::..:..:|..:.|:..:                   
Yeast   583 LPLNEHMFMNDSNQSNGAI----IPQQLIATPSPVSPNLQMNQRVL------------------- 624

  Fly   184 DKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNL-----PEEI 243
              || |.....|||..         |:.|:.....|        |....|:|:||:     .|:|
Yeast   625 --PN-PITQSLEQNFN---------VSAKVASSMGS--------DIGNRTIYIGNINPRSKAEDI 669

  Fly   244 TEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKR-NAAELAAERTFNKLVIQGRKVSIKWAHSQA 307
            .      ...:.|.::||..:|.::..||.:.:. :|.:..|....:.:|:.|..:.:.|.|...
Yeast   670 C------NVVRGGILQSIKYIPEKKICFVTFIEAPSAVQFYANSFIDPIVLHGNMLRVGWGHYSG 728

  Fly   308 KQGTAAKTDRRFDLAGIPPP---------SAKPNDYFNLRQ----EQINVMPAGMKLHQ---LPS 356
                             |.|         .|..|.|.:|.:    |:....|...|||:   ||.
Yeast   729 -----------------PLPKLISLAVTIGASRNVYVSLPEFAFKEKFIHDPQYKKLHETLSLPD 776

  Fly   357 NLVPASAYQMYG 368
            .......:..||
Yeast   777 AEQLREDFSTYG 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14641NP_649440.3 ZnF_C3H1 159..185 CDD:214632 1/25 (4%)
RRM_RBM22 231..304 CDD:409671 17/78 (22%)
PABP-1234 <234..>377 CDD:130689 32/157 (20%)
NAB6NP_013589.1 RRM 60..99 CDD:402136
Nab6_mRNP_bdg 200..560 CDD:431363 11/41 (27%)
RRM3_MRN1 652..725 CDD:240965 17/78 (22%)
RRM_SF 741..860 CDD:473069 13/48 (27%)
Blue background indicates that the domain is not in the aligned region.

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