DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and Chrna9

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_075219.2 Gene:Chrna9 / 65024 RGDID:621534 Length:479 Species:Rattus norvegicus


Alignment Length:506 Identity:192/506 - (37%)
Similarity:279/506 - (55%) Gaps:66/506 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 76
            |::|:.||..:|:..:|||.:|..||.|.:::.|||:.|::.:|||:|..||:.|:|:|..|.|:
  Rat    31 AQKLFSDLFEDYSSALRPVEDTDAVLNVTLQVTLSQIKDMDERNQILTAYLWIRQTWHDAYLTWD 95

  Fly    77 PKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVE 141
            ..:|..:..:.:|||.:|||||||||.||......:.|...:..:||:.|..|||.||||.:||.
  Rat    96 RDQYDRLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYDGLITWDSPAITKSSCVVDVT 160

  Fly   142 YFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEVPAVRNEKF 206
            |||||.|.|.|.||||||:|.:||:        .|.:..| |||:|...|||::..:|||:|...
  Rat   161 YFPFDSQQCNLTFGSWTYNGNQVDI--------FNALDSG-DLSDFIEDVEWEVHGMPAVKNVIS 216

  Fly   207 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHV 271
            |.||.|||.|:||.:.::|::.||.||::|||:.||||..|:||||:.|||||:|.::||:::.|
  Rat   217 YGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTV 281

  Fly   272 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFL 336
            |.|:|.||: |.|..|||:|||.|..|.|::.|..:|::|:|:||...:...:..|.|.|.:.::
  Rat   282 FQLMVAEIM-PASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAKVVILKYM 345

  Fly   337 PAFLFIKRPTYNFETSKLLLKDTHACFYPYYS-----ATNI-DRLVSSGYNNSLPKEDLSQSITA 395
            ...||:    |:...|         |..|.:|     .|.: .:|..|....|..| |||:....
  Rat   346 SRILFV----YDVGES---------CLSPRHSQEPEQVTKVYSKLPESNLKTSRNK-DLSRKKEV 396

  Fly   396 NGPFGGSCQVHGPVPPLT--HCSSDEIAAVPDMDIGPLGMKSPILNNPAFSHSKCLPKIHKSCFC 458
            ...........|.:|..|  :|:..|                .:..|..:. :||| |.||    
  Rat   397 RKLLKNDLGYQGGIPQNTDSYCARYE----------------ALTKNIEYI-AKCL-KDHK---- 439

  Fly   459 VRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIILQA 509
                |.::|..|        ||.||.|:||.|:|||...|.|.|..||.:|
  Rat   440 ----ATNSKGSE--------WKKVAKVIDRFFMWIFFAMVFVMTVLIIARA 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 189/500 (38%)
Neur_chan_LBD 12..227 CDD:280998 95/214 (44%)
Neur_chan_memb 234..505 CDD:280999 90/278 (32%)
Chrna9NP_075219.2 LIC 8..474 CDD:273305 189/500 (38%)
LGIC_ECD_nAChR_A9 31..237 CDD:349823 95/214 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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