Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_075219.2 | Gene: | Chrna9 / 65024 | RGDID: | 621534 | Length: | 479 | Species: | Rattus norvegicus |
Alignment Length: | 506 | Identity: | 192/506 - (37%) |
---|---|---|---|
Similarity: | 279/506 - (55%) | Gaps: | 66/506 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 AKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 76
Fly 77 PKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVE 141
Fly 142 YFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEVPAVRNEKF 206
Fly 207 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHV 271
Fly 272 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFL 336
Fly 337 PAFLFIKRPTYNFETSKLLLKDTHACFYPYYS-----ATNI-DRLVSSGYNNSLPKEDLSQSITA 395
Fly 396 NGPFGGSCQVHGPVPPLT--HCSSDEIAAVPDMDIGPLGMKSPILNNPAFSHSKCLPKIHKSCFC 458
Fly 459 VRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIILQA 509 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 189/500 (38%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 95/214 (44%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 90/278 (32%) | ||
Chrna9 | NP_075219.2 | LIC | 8..474 | CDD:273305 | 189/500 (38%) |
LGIC_ECD_nAChR_A9 | 31..237 | CDD:349823 | 95/214 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |