Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
Alignment Length: | 533 | Identity: | 276/533 - (51%) |
---|---|---|---|
Similarity: | 365/533 - (68%) | Gaps: | 41/533 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 VAGNPDAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYD 70
Fly 71 YKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSS 135
Fly 136 CEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQG-SNVVAVGVDLSEFYMSVEWDILEVP 199
Fly 200 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSIS 264
Fly 265 ILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVK 329
Fly 330 RVFIDFLPAFLFIKRPTYNFETSKLLLKDTHACFYPY---YSATN-----IDRL-VSSGYNNSLP 385
Fly 386 KEDLSQSITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDMDIGPL-------GMKSPI------ 437
Fly 438 LNNPAFSHSKCLPKIHKSCFCVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGT 502
Fly 503 AGIILQAPTLYDD 515 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 269/521 (52%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 140/215 (65%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 117/292 (40%) | ||
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 143/218 (66%) |
LIC | 47..544 | CDD:273305 | 263/514 (51%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 250 | 1.000 | Domainoid score | I2065 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 473 | 1.000 | Inparanoid score | I1461 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000583 | |
OrthoInspector | 1 | 1.000 | - | - | mtm6399 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X294 | |
9 | 8.970 |