DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha4 and acr-9

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_510285.2 Gene:acr-9 / 191597 WormBaseID:WBGene00000048 Length:534 Species:Caenorhabditis elegans


Alignment Length:551 Identity:193/551 - (35%)
Similarity:295/551 - (53%) Gaps:84/551 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VAGNPDAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYD 70
            |..:.|..||..||..||:...|||.|.::.|.|.:|:.|.|::||:.|||::|...|:|..|.|
 Worm    22 VHSSADEYRLLADLRHNYDPYERPVANASEPLVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTD 86

  Fly    71 YKLRWEPKEYGGVHMLHVP--SDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYK 133
            |||:|:|.||||:..:.:|  ::.||:||::|||:||.||:.|......:...|.|...||.|.|
 Worm    87 YKLKWDPSEYGGIKDIRIPGNANAIWKPDVLLYNSADENFDSTYPVNYVVSYTGDVLQVPPGILK 151

  Fly   134 SSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEV 198
            .||:||:.|||||:|.|.||||||||.|..:||| ::..:|.|:...|:|:..:..:.||::|.|
 Worm   152 LSCKIDITYFPFDDQICHLKFGSWTYSGNFIDLR-INGPEGKNISDEGIDVQYYVQNGEWNLLAV 215

  Fly   199 PAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 263
            ||......:.  ::||..:.|.:.::|:||:|.:|:|||...||.:|||.|.||.|:|||:||.|
 Worm   216 PARHETNIFD--EQPYPSLFFYLIIQRRTLYYGLNLIIPSFLISLMTVLGFTLPPDAGEKITLEI 278

  Fly   264 SILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWV 328
            :||:|:..|..:|.::.||||..|||:|.:....|::||.|:..||:|||:|.|.|:||:|:|::
 Worm   279 TILLSVCFFLSMVADMTPPTSEAVPLIGAFFSCCMLVVSASVVFTVLVLNLHNRKPETHEMSPFL 343

  Fly   329 KRVFIDFLPAFLFIKRPTYNFETSKLLLKDTHACFYPYYSATNIDRLVSSG-YNNSL-------- 384
            :.:.:.:||..|.::||      .|.:...||      ..|...:.....| ..|.:        
 Worm   344 RELLLIWLPWLLLMRRP------GKTIFNCTH------LKAEKAEEKAKQGSIKNGVGPGKPTDS 396

  Fly   385 --PKEDLS----------QSITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDMDIGPLGMKSPI 437
              |.|.||          |:|.....|              |...:.:     |.:.|..|    
 Worm   397 VHPSEGLSLMKNIKLGRQQTIDFEYEF--------------HVQHNHL-----MPVAPSEM---- 438

  Fly   438 LNNPAFSHSKCLPK--------------IHKSCFCVRFIAEHT-----KMQED--STKVKEDWKY 481
              .|..::||.:.:              :.|:|..::.|:..|     ||:||  ..:...|||:
 Worm   439 --TPRVTYSKVMAESYVEDVVMTELNKYMQKACLELKNISSQTRAMRKKMEEDERDEQAANDWKF 501

  Fly   482 VAMVLDRLFLWIFTLAVVVGTAGIILQAPTL 512
            .|||:||..|..|::.:||.|.||:..:|.|
 Worm   502 AAMVVDRCCLITFSVFIVVSTCGIMFSSPHL 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 189/542 (35%)
Neur_chan_LBD 12..227 CDD:280998 90/216 (42%)
Neur_chan_memb 234..505 CDD:280999 93/312 (30%)
acr-9NP_510285.2 LIC 28..525 CDD:273305 187/536 (35%)
Neur_chan_LBD 28..242 CDD:280998 90/216 (42%)
Neur_chan_memb 249..525 CDD:280999 93/312 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.